Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20572
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.007
11_04_0234 + 15187065-15188241,15188316-15188494 35 0.069
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 31 0.85
10_06_0104 + 10786613-10788040 30 1.5
01_06_0170 + 27178952-27179572,27181631-27181816,27182245-271822... 30 1.5
01_06_0257 + 27932119-27932187,27932371-27932470,27932560-279326... 29 4.5
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 29 4.5
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 6.0
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 208 HHRLRYQVPA--DPRCPAKKLVVGVAMYGRGWTGVHDYNDDIPFTGVANGP-VKGTWQDG 378
H+ Y V + D PA K+V+G+ +YGR W + N + VA GP +G+ G
Sbjct: 258 HYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATG 317
Query: 379 VVDYREI 399
+ Y E+
Sbjct: 318 AMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 34.7 bits (76), Expect = 0.069
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 238 DPRCPAKKLVVGVAMYGRGW-TGVHDYNDDIPFTGVANGPVKGTWQDGVVDYREIVNGIT 414
D P KLV+G+ ++GR W D N T A + + Q GV+ Y EI +
Sbjct: 269 DAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAAGTKQRKSNQIGVIAYAEIEEYLK 328
Query: 415 SGTWQYFYDKVAQAPYVWNPTTGDL-VTYDDA 507
S + +D + A Y + +GDL V++D A
Sbjct: 329 SQSVFVTHDNQSVADYFY---SGDLWVSFDSA 357
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 247 CPAKKLVVGVAMYGRGWTGVHDYNDDIPFTGVA 345
CP + ++ G+A++ RGW V+ F GVA
Sbjct: 318 CPVEDVITGLAIHCRGWESVYMEPQRAAFVGVA 350
>10_06_0104 + 10786613-10788040
Length = 475
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 289 RGWTGVHDYNDDIPFTGVANGPVKG 363
RGW G D D +PF G A G V G
Sbjct: 161 RGWLGQRDSLDRLPFCGCAIGTVNG 185
>01_06_0170 +
27178952-27179572,27181631-27181816,27182245-27182274,
27183323-27183518,27183623-27183714,27183753-27183773,
27184216-27184248
Length = 392
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 676 IPISYSNPNQTS*P*AEFPKPIFIAFRISPLSASISQANSPPS 548
+P++ +P TS P PKP ++F + P SAS+S + S P+
Sbjct: 10 LPLAGLSPATTSFP-GSTPKPGSLSFALRPPSASLSSSASAPA 51
>01_06_0257 +
27932119-27932187,27932371-27932470,27932560-27932666,
27933619-27933621,27933833-27933866,27934081-27934229,
27934676-27934822,27935019-27935129,27935548-27935647,
27936115-27936165,27937297-27937334,27937448-27937540,
27937744-27937827,27939101-27939262
Length = 415
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 340 VANGPVKGTWQDGVVDYREIVNGITSGTWQYFYDKV 447
+ +G + W+D +D I++G +G QYF +V
Sbjct: 345 IVHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV 380
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 106 MVHVFLGFLVVHDLDLVPTGAYGRGQLVS 20
++H F+G V+H LDL G G ++S
Sbjct: 1076 LLHGFVGHTVIHKLDLATMAQEGNGDILS 1104
>06_03_1130 -
27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 95 YMDHIFVMSYDFKGAWSNDTLGHQTA-LYAPSWSP--KETYTT-DFGIRYLLTQGVQPKS 262
Y++ IF S +F +W D + W+P +++Y D RY L V P+S
Sbjct: 420 YVEVIFENSENFVQSWHIDGYAFWVVGMDGGQWTPASRQSYNLRDAVARYTLQ--VYPQS 477
Query: 263 WLSVLLCTDVVGL 301
W ++ + D VG+
Sbjct: 478 WTAIYMPLDNVGM 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,452,782
Number of Sequences: 37544
Number of extensions: 468551
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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