Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20572
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 46 3e-05
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 37 0.013
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 35 0.053
SB_25512| Best HMM Match : PAP2 (HMM E-Value=2) 31 0.86
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014) 29 4.6
SB_20925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_36266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +2
Query: 2 AAETGRT-YELTSAISAGWDKI-QVVNYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTAL 175
AA+T R LT+A++AG I + + + +D I +M+YD +G W +T GH TAL
Sbjct: 283 AAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMAYDLRGMWEPET-GHHTAL 341
Query: 176 YAPSWSPKETYTTDFGIRYLLTQGVQPKSWLSVLLCT 286
P P E T F +Y + +G P S +++ L T
Sbjct: 342 EGP---PGEELTVSFAAQYWIDKGA-PASKIALGLGT 374
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 29 LTSAISAGWDKIQVV-NYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTALYAPSWSPKET 205
LT+A+SAG + + +D I +M+YD G W T GH TAL P P +
Sbjct: 562 LTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLHGPWEPYT-GHHTALVGP---PGDK 617
Query: 206 YTTDFGIRYLLTQGV 250
T + ++Y + +G+
Sbjct: 618 LTVSYAVKYWMEKGM 632
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 29 LTSAISAG-WDKIQVVNYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTAL 175
LT+A++AG W + + K +D I VM+YD G W T GH TA+
Sbjct: 569 LTAAVAAGLWTIKDAYDIEGISKPLDWINVMTYDLHGTWEPKT-GHHTAM 617
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 29 LTSAISAG-WDKIQVVNYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTAL 175
LT+A++AG W + + + +D I +M+YD G W T GH TA+
Sbjct: 184 LTAAVAAGLWTIKGAYDIADIAEPLDWINLMTYDLHGTWEYKT-GHHTAM 232
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 2 AAETGRT-YELTSAISAGWDKIQV-VNYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTAL 175
AA TG+ LT+A+SAG ++ + +D I +MSYD G W DT GH A+
Sbjct: 170 AANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWINLMSYDLHGDW-EDTTGHHAAM 228
Query: 176 YAPSWSP-KETYTTDFGI 226
+ + P T+ D I
Sbjct: 229 DSSTGDPLTVTHAVDLWI 246
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 35.1 bits (77), Expect = 0.053
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 AAETGRT-YELTSAISAGWDKIQV-VNYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTAL 175
AA TG+ LT+A+SAG ++ + +D I +MSYD G W DT GH A+
Sbjct: 94 AANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWINLMSYDLHGDW-EDTTGHHAAM 152
>SB_25512| Best HMM Match : PAP2 (HMM E-Value=2)
Length = 231
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 220 RYQVPADPRCPAKKLVVGVAMYGRGWTGVHDYNDDIPFTGVANGPVKGTWQD 375
+ Q+P DP C + K++ V +YG G V Y +P T A +K T ++
Sbjct: 9 KIQIPYDPDCLSCKIIGMVTLYGAG-ALVLSYVPRVPKTNPAGKEIKETREE 59
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 416 EVMPFTISL*STTPSCQVPLTGPLATPVKGMSSL*S*TPVQPR 288
E+ P ++ STTP+ + +GP +TP+ ++ + TP PR
Sbjct: 1637 EMQPLSVPPRSTTPTTPLSSSGP-STPISTVAPMTPLTPTSPR 1678
>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
Length = 916
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 268 VGVAMYGRGWTGVHDYNDDIPFTGVANGPVKGTWQDGVVDYRE--IVNGITSGTWQY 432
+GV YG TGV +Y GV G W+ GV +YR + ++G W+Y
Sbjct: 72 MGVQEYGS--TGVWEYRS----VGVQEYGSTGVWKSGVWEYRSMGVQEYGSTGVWEY 122
>SB_20925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 109 LRYELRLQGCLV*RHSGTPDCSICSILES 195
+RY++RL+ C++ DC + ++L+S
Sbjct: 121 IRYQIRLETCIIRYQKPLDDCRVSTVLQS 149
>SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 109 LRYELRLQGCLV*RHSGTPDCSICSILES 195
+RY++RL+ C++ DC + ++L+S
Sbjct: 94 IRYQIRLETCIIRYQIRLDDCRVSTVLQS 122
>SB_36266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 109 LRYELRLQGCLV*RHSGTPDCSICSILES 195
+RY++RL+ C++ DC + ++L+S
Sbjct: 70 IRYQIRLETCIIRYQIRLDDCRVSTVLQS 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,371,358
Number of Sequences: 59808
Number of extensions: 535039
Number of successful extensions: 1285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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