Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20572
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    26   0.38 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.50 
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.7  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 PKVSSQKAGCRCCYVRTWLDWSSRLQRRH 326
           PKV ++KAG +     TWLD    + R H
Sbjct: 327 PKVKNKKAGSKHLLQNTWLDPEYPMIRVH 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 131  KGAWSNDTLGHQTALYAPSWSPKETYT 211
            +  + +DT+ HQ  ++AP  SP+ T T
Sbjct: 1349 ENTFGHDTVTHQLIVHAPPHSPQITLT 1375


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 526 PFSITDLRHHKSPDRRL*DST 464
           P+ +  L HH SP+    DST
Sbjct: 4   PYHVAQLPHHLSPNMPTMDST 24


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 231 YLIPKSVV*VSLGLQDGAY 175
           YL+PK VV VS   + GA+
Sbjct: 43  YLLPKDVVVVSSNYRVGAF 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 607 IAFRISPLSASISQAN 560
           +A R +PL  SISQAN
Sbjct: 146 LASRTNPLDDSISQAN 161


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 607 IAFRISPLSASISQAN 560
           +A R +PL  SISQAN
Sbjct: 141 LASRTNPLDDSISQAN 156


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 261 AGCRCCYVRTW 293
           AGC+C   RTW
Sbjct: 763 AGCKCYNDRTW 773


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 617  LRKFRLGLACLIWIRITDRN 676
            L+K +LGL   +W R + +N
Sbjct: 1894 LKKLKLGLRSSLWSRPSTQN 1913


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 617  LRKFRLGLACLIWIRITDRN 676
            L+K +LGL   +W R + +N
Sbjct: 1890 LKKLKLGLRSSLWSRPSTQN 1909


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  IQVVNYKEAQKYMDHIFVMSYDFKGAWSNDTL 157
           + V  YK ++++ D     SYD   + ++D+L
Sbjct: 23  VSVAGYKHSRRHRDFTVAESYDASSS-NSDSL 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,518
Number of Sequences: 438
Number of extensions: 4840
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)