Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20572
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 35 0.057
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 32 0.40
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 32 0.40
At5g26100.1 68418.m03105 hypothetical protein 30 1.2
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 30 1.2
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 29 2.8
At1g21860.1 68414.m02736 multi-copper oxidase type I family prot... 29 2.8
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 29 3.7
At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO2... 29 3.7
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot... 27 8.6
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 34.7 bits (76), Expect = 0.057
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Frame = +1
Query: 250 PAKKLVVGVAMYGRGW--TGVHDYNDDIPFTGVANGPVKGTWQDGVVDYREIVNGITSGT 423
PAKK V+G YG W T + ++ P TG A P DG + Y +I I
Sbjct: 248 PAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISP------DGSIGYGQIRKFIVDNG 301
Query: 424 WQYFYDKVAQAPYVWNPTTGDLVTYDDANQLLRR 525
Y+ Y + T + + YDD ++ +
Sbjct: 302 ATTVYNSTVVGDYCYAGT--NWIGYDDNQSIVTK 333
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 31.9 bits (69), Expect = 0.40
Identities = 25/92 (27%), Positives = 38/92 (41%)
Frame = +1
Query: 250 PAKKLVVGVAMYGRGWTGVHDYNDDIPFTGVANGPVKGTWQDGVVDYREIVNGITSGTWQ 429
PAKK V+G YG WT + D D + GP DG + YR++ I
Sbjct: 226 PAKKAVLGFPYYGWAWT-LAD-PDVNGYDANTTGPAIS--DDGEISYRQLQTWIVDNGAT 281
Query: 430 YFYDKVAQAPYVWNPTTGDLVTYDDANQLLRR 525
+D + Y + TT + YD ++ +
Sbjct: 282 KVHDDMMVGDYCYAGTT--WIGYDSEKSIVTK 311
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 31.9 bits (69), Expect = 0.40
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +1
Query: 238 DPRCPAKKLVVGVAMYGRGWTGVHDYNDDIPFTGVANGPVKGTWQDGVVDYREIVNGITS 417
+ + PAKK V+G + G WT + D ++ + +G + DG + Y +I N I
Sbjct: 233 EAKLPAKKAVLGFSYCGWAWT-LEDAENN-GYDAATDGAAISS--DGSITYAKIRNYIID 288
Query: 418 GTWQYFYDKVAQAPYVWNPTTGDLVTYDDANQLLRR 525
F+D Y + TT + YDD ++ +
Sbjct: 289 NGAATFHDPAVIGFYCYVGTT--WIGYDDNQSIVSK 322
>At5g26100.1 68418.m03105 hypothetical protein
Length = 175
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 267 NQLFGWTPWVSRYLIPK 217
N+LF WTPW R++ PK
Sbjct: 153 NELFPWTPWPRRHIQPK 169
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/96 (23%), Positives = 36/96 (37%)
Frame = +1
Query: 238 DPRCPAKKLVVGVAMYGRGWTGVHDYNDDIPFTGVANGPVKGTWQDGVVDYREIVNGITS 417
D PA+K V+G YG WT N + GP DG + Y ++ I
Sbjct: 135 DAGLPAEKAVLGFPYYGWAWTLADPKNHG--YYVDTTGPAIS--DDGEISYSQLKTWIVD 190
Query: 418 GTWQYFYDKVAQAPYVWNPTTGDLVTYDDANQLLRR 525
+D + Y + TT + YD ++ +
Sbjct: 191 NKATTVHDNIVIGDYCYAGTT--WIGYDSEESIVTK 224
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = +1
Query: 250 PAKKLVVGVAMYGRGW--TGVHDYNDDIPFTGVANGPVKGTWQDGVVDYREIVNGITSGT 423
PAKK V+G +YG W T ++N +G A P DG + Y +I I
Sbjct: 246 PAKKAVLGFPLYGYAWCLTDAKNHNYYANSSGPAISP------DGSIGYDQIRRFIVDNK 299
Query: 424 WQYFYDKVAQAPYVWNPTTGDLVTYDDANQLLRR 525
Y+ Y + T + YDD ++ +
Sbjct: 300 ATMVYNSNLVQNYCYAKKT--WIGYDDNQSIVMK 331
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 507 KSVIEKGKYVRNNKLGGLFAWEIDADNGDILN 602
+S++ K KY + L G F+W I AD+ L+
Sbjct: 326 QSIVMKVKYAKQRGLLGYFSWHIGADDNSRLS 357
>At1g21860.1 68414.m02736 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 538
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 95 YMDHIFVMSYDFKGAWSNDTLG-HQTALYAPSWSP--KETYTTDFGIRYLLTQGVQPKSW 265
+++ IF S D +W D + + WSP ++ Y + I Q V P+SW
Sbjct: 419 FVEVIFENSEDIVQSWHLDGYSFYVVGMELGKWSPASRKVYNLNDAILRCTIQ-VYPRSW 477
Query: 266 LSVLLCTDVVGL 301
++ + D VG+
Sbjct: 478 TAIYIALDNVGM 489
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 507 KSVIEKGKYVRNNKLGGLFAWEIDADN 587
+SV+ K KY + L G F+W + AD+
Sbjct: 312 QSVVAKVKYAKQKGLLGYFSWHVGADD 338
>At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO242
5' end, gb|Z30466 and OAO242 3' end, gb|Z30467
Length = 197
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 71 VNYKEAQKYMDHIFVMSYDFKGAWSNDTLGHQTALYAPSWSPKETYTTDFGIRYLLTQGV 250
+ YKE Y+ ++ +F +S++ L LYA KET G R QG+
Sbjct: 4 LRYKEC--YLLICLIVFINFVTCYSDERLFGGKTLYAGKELWKETLPLKSGSRVYKLQGL 61
Query: 251 QPKSWLSV 274
+ SW V
Sbjct: 62 KSNSWYEV 69
>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 541
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +2
Query: 95 YMDHIFVMSYDFKGAWSNDTLGHQTA-LYAPSWSP--KETYTTDFGIRYLLTQGVQPKSW 265
+++ IF S D +W D + WSP + Y + Q V P SW
Sbjct: 419 FVEIIFENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQ-VYPSSW 477
Query: 266 LSVLLCTDVVGL 301
++L+ D VG+
Sbjct: 478 TAILIALDNVGM 489
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,245,086
Number of Sequences: 28952
Number of extensions: 368367
Number of successful extensions: 875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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