Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20571
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0271 + 20276965-20278674                                         30   1.6  
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695...    29   4.9  
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271...    28   8.5  
09_03_0181 + 13149531-13149601,13150772-13151126,13152527-131526...    28   8.5  

>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 122 PSEHNLYIKILLRRTYCPRGCIFTGAAYL*SRDPTTMMM 6
           P +H+L +++LL R+Y  RG + T A  L    P + ++
Sbjct: 42  PPDHDLRLRLLLLRSYAARGDLATAARLLDEAPPPSPLL 80


>01_07_0378 -
           43167805-43169152,43169258-43169326,43169473-43169544,
           43169677-43169745,43169979-43171161,43171239-43171365
          Length = 955

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 603 RIRLRNLTKMFGVTLPEEVEAYILLY-YSINHVLKKSLQMSMV 478
           RI  RNL    G     +  +Y+L+Y Y  N  LK+ LQM  +
Sbjct: 669 RIHHRNLVAFLGYCWERDSSSYMLVYEYMHNGSLKEQLQMMSI 711


>11_06_0713 +
           26524984-26525276,26526008-26526434,26526550-26527171,
           26528059-26528099,26528181-26528249,26528565-26528665,
           26529300-26529378,26529955-26530053,26530129-26530197,
           26530326-26530375,26530482-26530548,26531031-26531125,
           26534469-26534856
          Length = 799

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 317 TIYISLWYLLDGKL*IFGKYKYVNE-TLTYK 406
           T+Y +LWY  D  + +F KY+Y  +  LT++
Sbjct: 452 TVYHALWYGSDVAVKVFSKYEYSEDMILTFR 482


>09_03_0181 +
           13149531-13149601,13150772-13151126,13152527-13152634,
           13152698-13152775,13154828-13154915,13156777-13157177
          Length = 366

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 342 YSMGNYK-FSGNTSTSMKL*HINYNTLKVYSIKSIGM 449
           YS+   K F+G+ +T MK    N+  +KV+ ++ IGM
Sbjct: 95  YSLHGQKVFTGSQTTMMKKTKFNWMEIKVFFLRFIGM 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,324
Number of Sequences: 37544
Number of extensions: 290537
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)