Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20571
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)                     29   2.8  
SB_42714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)                      28   8.7  

>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 130 YVNLPNIISILKFCSDELTAHVDVYLPELHICSQGILL 17
           +VN P+I       SD+L  +   YLP  H CS G++L
Sbjct: 679 FVNHPHINFHFTEISDKLDHNPYDYLPSAHTCSNGLIL 716


>SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)
          Length = 584

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 130 YVNLPNIISILKFCSDELTAHVDVYLPELHICSQGILL 17
           +VN P+I       SD+L  +   YLP  H CS G++L
Sbjct: 516 FVNHPHINFQSTEISDKLDNNPYDYLPSAHTCSNGLIL 553


>SB_42714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 12  HCSRIP*LQICSSGKYTSTWAVSSSEQ 92
           + S I  L +C S +YT+TWA SS  Q
Sbjct: 599 YTSLIHGLHVCVSREYTTTWAGSSGPQ 625


>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
          Length = 295

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 508 LKKILTNEYGLSVYHSDIQFI 446
           L K++ NEYGLS+ H  + FI
Sbjct: 180 LLKLVKNEYGLSILHFGLTFI 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,354
Number of Sequences: 59808
Number of extensions: 379671
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)