Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20571
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74032-5|CAA98467.1|  219|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z74032-5|CAA98467.1|  219|Caenorhabditis elegans Hypothetical
           protein F35B12.6 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 139 NCNYVNLPNIISILKFCSD 83
           N NY N PN  S +KFC D
Sbjct: 195 NGNYNNFPNFQSCMKFCQD 213


>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 567 VTLPEEVEAYILLYYSINHVLKKSLQMSMVYRFI 466
           VTLP   EA+  ++Y   H  KK + +  ++ F+
Sbjct: 35  VTLPVYAEAFYCVFYKCKHFSKKYVVLLQIHLFL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,665
Number of Sequences: 27780
Number of extensions: 304733
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)