Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20571
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 VIHIKQLYVGRYQVSQFLAY*SGNKNIKL 320
           +IH KQ+  G+Y+  +   Y SG   + +
Sbjct: 542 IIHFKQIEPGKYEWVRVGKYLSGELRLNM 570


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 148 LNFNCNYVN 122
           LNFN NYVN
Sbjct: 56  LNFNLNYVN 64


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 612 KTPRIRLRNLTKMFGV 565
           +TP I+L N+ K +G+
Sbjct: 45  QTPLIKLNNIPKSYGI 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,444
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)