Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20571
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containi...    31   0.58 
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    27   9.4  
At3g50850.1 68416.m05568 expressed protein                             27   9.4  

>At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containing
           protein contains multiple Pfam domains: PF01535: PPR
           repeat
          Length = 538

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = -3

Query: 558 PEEVEAYILLYYSINHVLKKSLQMS---MVYRFIIVTSSSFRYF*CYKL*GYCNLYVKVS 388
           P    A  LL   I+ V+ KS  ++    V  F+IV+  S  +F C+KL  +C L +  +
Sbjct: 14  PSSHMAEQLLNQFISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRL-CN 72

Query: 387 LTYLYFP-KIYSFPSS 343
           L+Y  F    +SFP++
Sbjct: 73  LSYARFIFDRFSFPNT 88


>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 711

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 130 YVNLPNIISILKFCSDELTAHVDVYL 53
           YVN P+ ++  K  +D +T HVDV L
Sbjct: 268 YVNTPSPLTTKKMLTDSVTGHVDVKL 293


>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 739

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 130 YVNLPNIISILKFCSDELTAHVDVYL 53
           YVN P+ ++  K  +D +T HVDV L
Sbjct: 296 YVNTPSPLTTKKMLTDSVTGHVDVKL 321


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 127 VNLPNIISILKFCSDELTAHVDVYLPELHIC 35
           ++LP++ISI +   D   +HVD+  PE  IC
Sbjct: 169 IDLPSVISINRH--DHRISHVDILRPEEWIC 197


>At3g50850.1 68416.m05568 expressed protein
          Length = 251

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 151 TLNFNCNYVNLPNIISILKFCSDELTAHVDVYLPELHICS 32
           TL  N    +LPN+I  LKF +D     V  +  ++H+ S
Sbjct: 109 TLGANVTVTDLPNVIENLKFNADANAQVVAKFGGKVHVAS 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,477
Number of Sequences: 28952
Number of extensions: 266477
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)