Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20570
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 123 3e-29
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 119 4e-28
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.7
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 3.6
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 3.6
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 4.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 4.7
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 6.3
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 6.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 8.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 8.3
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 8.3
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 8.3
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.3
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 123 bits (296), Expect = 3e-29
Identities = 58/86 (67%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 ERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDV 429
ERNLLSVAYKN++GARR+SWR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DV
Sbjct: 42 ERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDV 101
Query: 430 LGLLDKHLIPKASNPESKVFYLKMKG 507
L +L+KHLIP A+ ESKVFY KMKG
Sbjct: 102 LSVLEKHLIPAATTGESKVFYYKMKG 127
Score = 91.5 bits (217), Expect = 1e-19
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = +3
Query: 510 YYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 689
YYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+S
Sbjct: 129 YYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDS 188
Query: 690 PDKACQLAKQ 719
P+ AC LAKQ
Sbjct: 189 PESACHLAKQ 198
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 134 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 250
MS +E V AKLAEQAERY++M MK+V + +LS
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLS 39
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 119 bits (287), Expect = 4e-28
Identities = 56/86 (65%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 ERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDV 429
ERNLLSVAYKNV+GARR+SWR++SSIEQK E G+ + ++ KEYR K+E+EL IC D+
Sbjct: 43 ERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDI 102
Query: 430 LGLLDKHLIPKASNPESKVFYLKMKG 507
L +L+KHLIP A++ ESKVFY KMKG
Sbjct: 103 LTVLEKHLIPNAASAESKVFYYKMKG 128
Score = 105 bits (252), Expect = 6e-24
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +3
Query: 510 YYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 689
YYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILNS
Sbjct: 130 YYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNS 189
Query: 690 PDKACQLAKQA 722
PD+AC LAKQA
Sbjct: 190 PDRACYLAKQA 200
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 137 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 250
+ +E+ V AKLAEQAERY+ M MK V T EL+
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELT 40
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 516 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 662
RY+ ++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 283 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 399
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.6
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Frame = +1
Query: 316 RVISSIEQKTEGSERKQQMAKEYRVKVEKE-LREICYDVLGL--LDKHL---IPKASNPE 477
+V+SS + E S + + R E E L E+ +V L +D+ +P+ NP
Sbjct: 263 KVLSSSSEDDESSSPEDLLKPIIRSTEEMENLNELEQEVQDLDPIDEGFEEKVPRFRNPS 322
Query: 478 SKVFYLKMKGV---TTGTLQKWPQEKPDILL 561
K FY K+ + + L+ EK D L+
Sbjct: 323 KKAFYEKLHSLRNRSYSKLESLTSEKSDTLI 353
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +3
Query: 486 VLPQNERSYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSV 665
+LP NE Y+ + +G S SQ+ D +EI K + I + +SV
Sbjct: 187 LLPLNEYPEYKLFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSV 246
Query: 666 FY 671
+
Sbjct: 247 IF 248
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 261 PLPLLSSTPVSVTSFIAAAMSSYRSACSANLARCTSSSLST 139
PL S T + +SFI + +SS S++ A TSSS +T
Sbjct: 65 PLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSAT 105
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 306 PSGTYDILISN*KEVPLPLLSSTPVSVTSFIAAAMSSY-RSACSANLARCTSSSLS 142
PS + +L S+ SS+P+S +SF + A SS+ S S++ + +SSS S
Sbjct: 42 PSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSAS 97
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 337 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 462
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 340 KTEGSERKQQMAKEYRVKVEKELREI-CYDVLGLLDKHLIPKASNPESKVFYLKMKGVTT 516
K +G RK ++ R E LR C+ + +L + PES+ +YL++K
Sbjct: 1476 KLQGRARKTELHGFIRANAEMVLRSPECF--IKILKDCCVLGHFTPESEHYYLELKESLP 1533
Query: 517 GTLQ 528
G LQ
Sbjct: 1534 GVLQ 1537
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 166 TLHQFFLVDGHRGRWKRTNSLMPELLKPAVLE 71
TL FL DG RWK + P V+E
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVME 83
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 271 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 405
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 45 EIKKK*CLHSKTAGFNNSGISELVLFHRPRCPSTRKNWCNVPNWPNKLSDM 197
++K+ + S F N S+ + F +PR K N WPN+ S +
Sbjct: 50 QLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHL 100
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 271 SVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 411
SV+ + +R S+ S E + E SE R+Q++ +E R + EK+LR
Sbjct: 358 SVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 549 WFLLWPLLQGTCSNSFHFEVK 487
W LLW L GT S S+H +
Sbjct: 1393 WLLLWDLRFGTLSCSWHMPAR 1413
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 492 PQNERSYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHP 632
P N R+ R + GE RH VED + A + +++ + P +P
Sbjct: 1071 PLNPRTGQREVYFELNGENRHVTVEDKKAAIE---TVTRPRADPGNP 1114
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 626 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 525
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 489 LPQNERSYYRYLAEVATGETRHSVVEDSQKAY 584
L + E Y R+L E A + V+ED +Y
Sbjct: 242 LEEEEHGYERFLLESAQSKEARKVLEDLSSSY 273
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 355 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 477
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,607
Number of Sequences: 5004
Number of extensions: 63850
Number of successful extensions: 218
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -