Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20570
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   1e-29
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             96   2e-20
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      92   4e-19
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)                    31   0.95 
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 28   6.7  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     28   6.7  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  127 bits (306), Expect = 1e-29
 Identities = 62/86 (72%), Positives = 69/86 (80%)
 Frame = +1

Query: 250 QRERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDV 429
           Q ERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q  + YR  +E EL E+C  V
Sbjct: 17  QEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTETYRQTIENELNEVCETV 76

Query: 430 LGLLDKHLIPKASNPESKVFYLKMKG 507
           L LL+  LIP A + ESKVFYLKMKG
Sbjct: 77  LKLLESKLIPNAQSTESKVFYLKMKG 102



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
 Frame = +3

Query: 510 YYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA--KMQPTHPIRLGLALNFSVFYYEIL 683
           YYRY  EVA  + R  VV+ + KAY +A EI++   K+ PT PIRLGLALNFSVFYYEI+
Sbjct: 104 YYRYEGEVAGADRRREVVQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIV 163

Query: 684 NSPDKACQLAKQA 722
               +AC LAK+A
Sbjct: 164 EDSKQACDLAKKA 176



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/59 (55%), Positives = 46/59 (77%), Gaps = 3/59 (5%)
 Frame = +3

Query: 555 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQA 722
           +VVE + +AY++A E ++    K+ PT PIRLGLALNFSVF+YEI  + ++AC+LAKQA
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQA 265


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  103 bits (248), Expect = 1e-22
 Identities = 50/86 (58%), Positives = 68/86 (79%)
 Frame = +1

Query: 250 QRERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDV 429
           + ERNLLSV+YKN+VG RRSSWRVISSIE+KT  S     + K+Y+  +EKEL+++C +V
Sbjct: 119 KEERNLLSVSYKNIVGQRRSSWRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEV 177

Query: 430 LGLLDKHLIPKASNPESKVFYLKMKG 507
           LG+L++ LIP A + E+KVFY K+KG
Sbjct: 178 LGILER-LIPGAEDEENKVFYFKLKG 202



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +2

Query: 134 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 250
           M V +E L+  AKL+EQ +RYD+MA  MKEV+E   +LS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLS 118


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
 Frame = +1

Query: 256 ERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYD 426
           +RNLLSVAYKNV+GARR+SWR+I+SIEQK E  G +  K +M + YR  +E+EL+ IC +
Sbjct: 41  DRNLLSVAYKNVIGARRASWRIITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGE 100

Query: 427 VLGLLDKHLIPKASNPESKVFYLKM 501
           +L LLD  LI  + + ESKVFY K+
Sbjct: 101 ILSLLDDSLIKNSQSEESKVFYNKI 125



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 143 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 250
           DKEE V  AKLAEQAERYDDM  +MKEV + G ELS
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELS 38


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 49/87 (56%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 ERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLG 435
           ERNLLSVAYKNVVGARRSSWRVISS+EQK    E    + K+YR  +  EL   C +VL 
Sbjct: 48  ERNLLSVAYKNVVGARRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLD 105

Query: 436 LLDKHLIPKAS---NPESKVFYLKMKG 507
           +L+ +L+       N E+KVFYLKM+G
Sbjct: 106 ILENYLLKDGQDDINTEAKVFYLKMRG 132



 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 42/71 (59%), Positives = 55/71 (77%)
 Frame = +3

Query: 510 YYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 689
           Y+RYL EVA G++R   +E S++AY+DA      ++ P+HPIRLGLALNFSVFYYEI N 
Sbjct: 134 YHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVFYYEIENK 192

Query: 690 PDKACQLAKQA 722
           P +AC+LAK+A
Sbjct: 193 PPEACKLAKEA 203



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = +2

Query: 122 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSN 253
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L++
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLND 46


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
 Frame = +1

Query: 250 QRERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICY 423
           +  RNLLSV YKNVVG++R +WR +     ++    R  Q+    +Y+ K+E EL+ +C 
Sbjct: 225 KEHRNLLSVGYKNVVGSKRFAWRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCR 284

Query: 424 DVL 432
           ++L
Sbjct: 285 EIL 287



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 134 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 250
           M   + ELVQ AKLAEQ ER++D+   MK+  E    L+
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLN 224


>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 1053

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 246  SSTPVSVTSFIAAAMSSYRSACSANLARCTSSSLSTDI----VDDGRGL 112
            +STP SV SF+ A ++S  S+    L      S   D+    VDDGR L
Sbjct: 995  TSTPWSVRSFVVAPLNSVPSSTMRTLGHVRGPSAYIDVSEFAVDDGRAL 1043


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 534  ATGETRHS-VVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 689
            A GETR    + D+ +A +D     KA+ Q     +   ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 304 RSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 471
           +  W ++S  E+    +ER++Q   E +VK E++ R+   ++  +   HL  K SN
Sbjct: 338 KHQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393


>SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 264 VPLPLLSSTPVSVTSFIAAAMSSYRSACS-ANLARCTSSSLSTDI 133
           VP P+   T ++   F++ ++S YRS  +  N+ +  ++SL  D+
Sbjct: 350 VPFPVTKQTYLAYHVFLSRSLSCYRSVINYVNILKHVNNSLGADL 394


>SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 310 MTVGHLRHSYKQLKGGSSPVAKFDAGFRHFLHRGRH 203
           +TV H++H  K  +GG +PV  F    RH  H G++
Sbjct: 86  VTVRHVQHIGKTNEGGDAPV-MFRVTVRHVQHIGKN 120


>SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 868

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 588 LGMLSVNPLQQNVWFLLWPL--LQGTCSNSFHFEVKHFTFWI 469
           L +LS +P++   W+L W +   +       +FE+KH  + +
Sbjct: 781 LKLLSEDPIEVQYWYLEWTICKTRNIMLRDLNFEIKHIDYML 822


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 316  RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 420
            R++  IE+K E  E  ++ AKE + + E+E + IC
Sbjct: 919  RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 361 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 462
           K++M ++Y  K+EKE+    Y+++  L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,243,278
Number of Sequences: 59808
Number of extensions: 472036
Number of successful extensions: 1248
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)