Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20568
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    31   0.13 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    28   1.6  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   2.7  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   2.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   4.7  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   4.7  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   8.3  

>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 600 ALPNSTLYLAYLAILHVLHEDI 535
           +L +ST+Y+AY  I H+LH D+
Sbjct: 617 SLTDSTIYMAYYTICHLLHSDV 638


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 6   TDHCRAEPGKGN--TEETRFRQEGGATRRAGPAEQERPHRDR 125
           TD   A+P K    T  TR R+     R A PAE E+PH  R
Sbjct: 456 TDTFWAQPAKTQFRTAFTRSREWRRRYRVAPPAENEKPHTSR 497


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 1   NKLTTAELNREKEIQKKLDFVKKE 72
           NK+  A++  +K ++KK DFVK E
Sbjct: 54  NKMYAAKIMNKKMMEKKQDFVKNE 77


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 10  TTAELNREKEIQKKLDFVKKEERRAELVRQNKS 108
           T A  +R+KE Q+K +++KK ++ A + + N++
Sbjct: 444 TRASYDRQKE-QRKKEYIKKVKKEASIKKHNEA 475


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 576  LAYLAILHVLHEDIKP 529
            LAY+   H+LH DIKP
Sbjct: 1149 LAYIHSQHILHRDIKP 1164


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 7   LTTAELNREKEIQKKLDFVKKE-ERRAELVRQN 102
           L  + L +EK+I KKL F KK  E +  + RQN
Sbjct: 532 LKDSRLKKEKKIPKKLPFWKKYLELQLTMFRQN 564


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  ELNREKEIQKKLDFVKKEERRAELVRQN 102
           + N+E E Q   D+V ++ R  +L+++N
Sbjct: 81  DANKEPEKQSTSDYVSRKNRHMQLIKKN 108


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 576 LAYLAILHVLHEDIKP 529
           L+YL   HV+H DIKP
Sbjct: 200 LSYLHKKHVIHRDIKP 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,323
Number of Sequences: 5004
Number of extensions: 42103
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)