Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20568
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    29   3.7  
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   6.5  
08_02_0413 - 16875543-16875599,16875816-16876019                       28   8.6  

>03_05_0890 - 28547462-28547545,28548451-28548528,28548641-28548814,
            28548902-28548958,28549065-28549116,28549907-28549995,
            28550259-28550344,28550427-28550637,28551790-28551882,
            28551958-28552098,28552175-28552267,28553879-28554113,
            28554263-28554435,28555234-28556571,28556668-28556853,
            28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 627  CIS*TNALIALPNSTLYLAYLAILHVLHEDIKP 529
            C+    A I L    L L YL  +H++H D+KP
Sbjct: 1004 CLDEDVARIYLAEVVLALEYLHSMHIVHRDLKP 1036


>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 54  RFRQEGGATRRAGPAEQERPHRDRGPALLRLERGPPTHASHAH 182
           R ++E  +T R G + +   ++DR   L   +RG   H  + H
Sbjct: 201 RAKEENKSTGREGQSSRSEAYKDRDSRLRHSDRGSKDHDRYRH 243


>08_02_0413 - 16875543-16875599,16875816-16876019
          Length = 86

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 78  TRRAGPAEQERPHRDRGPALLRLERGPPTHASHAHVTTVRFDICHTPTNINSQI 239
           T  A     +RPHR R   L      PP  +S+AH T       H    +  QI
Sbjct: 21  TAAATKTTSDRPHRRRHQLLRPHTSDPPASSSNAHPTAAAGSGLHGVLFVKMQI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,375,132
Number of Sequences: 37544
Number of extensions: 269461
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)