Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20568
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   5.0  
SB_54201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_47641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 28   8.8  

>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 18  RAEPGKGNTEETRFRQEGGATRRAGPAEQERPHRDRGPALLRLERGPPTHASHAH 182
           R E  +     TR+  + G  RR  P   +R HR +GP     + GPPT     H
Sbjct: 287 RDERSRSRERRTRWDTDSG-DRRLSPDRDDREHRRQGPR----DPGPPTSVIMLH 336


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 27   PGKGNTEETRFRQ--EGGATRRAGPAEQERPHRDRGPALLRLERGPPTH 167
            PG+ N ++T+  +    G+ R + P E E P +   P+LL   RGP TH
Sbjct: 1644 PGRTNVQQTQDIEVPPPGSKRPSTPEEPETPAQ---PSLLLSIRGPATH 1689


>SB_54201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 4   KLTTAELNREKEIQKKLDFVKKEERRAE 87
           K   AELNR+KEI+KK   +KK  +R +
Sbjct: 110 KQAAAELNRQKEIEKK---IKKTSKRTQ 134


>SB_47641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 220 PTSTVRFDTLTLSREKRHYVSIGRR*V*TERDASNVASKSF 342
           P    +  T    R KRH+VS  RR + + RDA   A K++
Sbjct: 215 PEGAWQSGTELTERRKRHFVSCSRRSLASRRDARACAPKAY 255


>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 51  TRFRQEGGATRRAGPAEQERPHRDRGPA 134
           +R R+EGGA R   P  +E  H +  P+
Sbjct: 777 SRLREEGGAAREEVPESEEEDHVEPAPS 804


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 63  QEGGATRRAGPAEQERPHRDRGPALLRLERGPPTHASH 176
           Q GGA  + GP + E  H   GP  L L++GPP    H
Sbjct: 211 QPGGAPLQGGPPQGE-SHGQPGPPAL-LQQGPPGPPFH 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,080,374
Number of Sequences: 59808
Number of extensions: 326247
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)