Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20568
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    26   0.41 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 18  RAEPGKGNTEETRFRQEG-GATRRAGPAEQERPHRDRGPALLRLERGPPTHASHA 179
           +A    GN ++     E  GAT R  P +      D+  + + L+ GPP HA  A
Sbjct: 204 KASEEHGNKKKKNKEDEDDGATPRKAPPQLSTT--DKKGSAIDLDIGPPLHADQA 256


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 532 AIGSTATRNVQTKSSTLPAVRQHYDMH 452
           ++G+  TRN +  SS L    QH+  H
Sbjct: 705 SMGAVMTRNSEMFSSLLSDTEQHFRQH 731


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 225 CWWACDRCQ 199
           C W CD+C+
Sbjct: 466 CCWVCDQCE 474


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 225 CWWACDRCQ 199
           C W CD+C+
Sbjct: 556 CCWVCDQCE 564


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 156 PPTHASHAHVTTVRFDICHTP 218
           P  H  HA   TVRF + H P
Sbjct: 277 PGDHGDHAPKQTVRFKV-HDP 296


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +3

Query: 93  PAEQERPHRDRGPALLRLERGPPTHASH 176
           P     PH   G   +    GPP H  H
Sbjct: 328 PHRGSSPHHQHGNHTMGPTMGPPHHHHH 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,070
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)