Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20568
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44180.1 68418.m05406 homeobox transcription factor, putative...    30   1.8  
At4g09930.1 68417.m01626 avirulence-responsive family protein / ...    29   4.1  
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr...    29   4.1  
At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family...    28   5.5  
At5g53100.1 68418.m06597 oxidoreductase, putative similar to for...    28   7.2  
At1g50670.1 68414.m05698 OTU-like cysteine protease family prote...    27   9.5  

>At5g44180.1 68418.m05406 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7/homeotic
           protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
           similar to GP|4165087| Williams-Beuren syndrome deletion
           transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
           domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 34  KEIQKKLDFVKKEERRAELVRQNKSARTE 120
           +E+Q++  F+KKE  RAE +RQ +  R E
Sbjct: 399 RELQRREKFLKKETIRAEKMRQKEEMRKE 427


>At4g09930.1 68417.m01626 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana];  contains
           Pfam PF04548: AIG1 family;
          Length = 335

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 1   NKLTTAELNREKEIQKKLDFVKKEERR 81
           N+L T++  + K++QK LD V++ ER+
Sbjct: 190 NRLRTSKRKKAKQVQKLLDLVEEVERK 216


>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 311

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 30  GKGNTEETRFRQEGGATRRAGPAEQERPHRDR 125
           GKGN EE  + +E   ++R GP+     H +R
Sbjct: 4   GKGNQEEEDYGEEDFNSKREGPSSNTTVHSNR 35


>At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 565

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 449 RVHIVVLPYSWQRR*FSLNVASRRTPYGLISSCK--TCKIAKYAK*RVLFGNAIRAFVYE 622
           R  ++V+  ++ R     N    R+   + SSC   TC+  K A   + F + +R  VY+
Sbjct: 91  RDDVIVMASNFFRIALDHNFTKGRSKELVFSSCLYLTCRQFKLAVLLIDFSSYLRVSVYD 150

Query: 623 IQ*IYYSLC 649
           +  +Y  LC
Sbjct: 151 LGSVYLQLC 159


>At5g53100.1 68418.m06597 oxidoreductase, putative similar to
           forever young oxidoreductase (FEY3) GI:12004621 from
           [Arabidopsis thaliana]
          Length = 364

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 505 VQTK-SSTLPAVRQHYDMHAAITIFILKY*EMYAATTRSATEPSAANHSQEL 353
           VQT  +  LP + Q  D+++A+  FI    E   ++  SAT+P   NH Q+L
Sbjct: 250 VQTNITRDLPRLVQ--DLYSALPYFIFSPQEGCRSSLFSATDPQIPNHYQKL 299


>At1g50670.1 68414.m05698 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 208

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 519 RRLATFKLNHRRCQLYGNTTICTRRLLFLY 430
           R +A + +   RC LYG T     R++ +Y
Sbjct: 87  REIAAYDIQTSRCDLYGQTRNYDERVMLIY 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,314,402
Number of Sequences: 28952
Number of extensions: 212042
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)