Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20567
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    49   3e-07
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.094
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   2.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   6.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    24   8.1  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   8.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   NNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKA 178
           NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N  R    +     K 
Sbjct: 15  NNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKN 74

Query: 179 TRKPAKNLIRRPFKAGA-RRSLYK 247
            +KPAK L R+   A A  R  YK
Sbjct: 75  AQKPAK-LFRKDVIANASSRKTYK 97



 Score = 32.7 bits (71), Expect = 0.023
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 274 YRTDLCKATLRRASAILRSQRP 339
           YR DL K ++ RASAIL SQRP
Sbjct: 108 YRDDLVKVSVARASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 30.7 bits (66), Expect = 0.094
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 163 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 17
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 372 GCGCLSLFCFDGPLG 328
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 120 PTAFL*IKPLYLKEWRLVTLFGSLLN 43
           PT+F  IKPL  + +R+  L+  LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 411 FKNLLSAYKLFRLGCGCLSLFC 346
           FKN+ +A+ LF     C+ LFC
Sbjct: 152 FKNIANAFFLFVTLLQCIPLFC 173


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 103 SQESRWCRGEP*QEGIHSSVQESKGY 180
           S +S W   +P  + IHSSVQE++G+
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGF 24


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 173 LLSCTLL*IPSCQGSP 126
           LL C+++ I SCQG P
Sbjct: 542 LLICSIIDISSCQGDP 557


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  NIKKPFSKEPNNVTNLHSFRYNGLI 103
           N+KK ++    N+T  HS+  NG I
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTI 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,448
Number of Sequences: 5004
Number of extensions: 32013
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)