Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20567
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 57 5e-09
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 55 2e-08
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 54 6e-08
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 29 1.9
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 5.9
05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072 27 7.8
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 27 7.8
05_04_0300 - 19969066-19969535,19971216-19972686 27 7.8
04_04_1404 + 33302080-33303341,33303435-33305307 27 7.8
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 57.2 bits (132), Expect = 5e-09
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Frame = +2
Query: 2 NNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKA 172
NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K VV
Sbjct: 16 NNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTT 74
Query: 173 KATR--KPA----KNLIRRPFKAGARRSLYKVK-SC*RLTTTAQTYARLPFVVLQPSSAP 331
K + KPA K+++R+ F+ A+ +V + R T ARL V A
Sbjct: 75 KTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAK 134
Query: 332 RGPSKQKR 355
G K+ R
Sbjct: 135 SGVKKKNR 142
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 55.2 bits (127), Expect = 2e-08
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Frame = +2
Query: 2 NNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKK 169
NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + + V+ K
Sbjct: 16 NNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTK 75
Query: 170 AKATRKPA----KNLIRRPFKAGARRSLYKVK-SC*RLTTTAQTYARLPFVVLQPSSAPR 334
K PA K+++R+ F+ A+ +V + R T ARL V A
Sbjct: 76 TKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRSLQVAKS 135
Query: 335 GPSKQKR 355
G K+ R
Sbjct: 136 GVKKKNR 142
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 53.6 bits (123), Expect = 6e-08
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Frame = +2
Query: 2 NNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKK 169
NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + + V+ K
Sbjct: 16 NNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTK 75
Query: 170 AKATRKPA----KNLIRRPFKAGARRSLYKVK-SC*RLTTTAQTYARLPFVVLQPSSAPR 334
K PA K+++R+ F+ A+ +V + R T ARL V +
Sbjct: 76 TKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRSLQVSKS 135
Query: 335 GPSKQKR 355
G K+ R
Sbjct: 136 GAKKKNR 142
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 290 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 385
A PF + +S+PR P + RQP P R++
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 337 ASGSGGWLKHDEG*PCIGLCGSG*P 263
A GSGGW + +G CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072
Length = 258
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 400 IKRLQIIPTWLRLS*PFLL*WASGSGGWLKH 308
++R + P+W + L W +GSGG ++H
Sbjct: 7 LRRARSHPSWAAAARGLLATWGAGSGGRVRH 37
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 5 NAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLI--HKKAVGVVENPDRKG 148
N + R+I+ S+ P++++ SF YNGL H A+ PD G
Sbjct: 478 NHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIG 527
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 337 ASGSGGWLKHDEG*PCIGLCGSG*PLTTLHFVQ*PPGTS 221
A+GSGG +KH+E G G G P +L Q PG S
Sbjct: 97 ANGSGGEVKHEESDE--GRSGGGDPKWSLKRKQASPGPS 133
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 317 PSSAPRGPSKQKRLR---QPQPSRNNL 388
P+S P G K+KRLR + +P R NL
Sbjct: 381 PTSQPEGERKKKRLRKTGETEPCRGNL 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,607
Number of Sequences: 37544
Number of extensions: 242070
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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