Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20567
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        36   0.010
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    31   0.38 
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      28   3.5  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   4.6  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                27   6.1  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  27   6.1  
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)               27   6.1  
SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +1

Query: 133 P*QEGIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTVQSEELLKANHYRTDLCKATLRRA 312
           P  +G+  + +++K   K    +N  +I    +      E +   N+YR DL    +RRA
Sbjct: 8   PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 67

Query: 313 SAILRSQRP 339
            AILRSQ+P
Sbjct: 68  CAILRSQKP 76



 Score = 29.9 bits (64), Expect = 0.87
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 116 VGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVK 253
           VGV   P  KG  +  +K KA  KP K + +      +RR+L  ++
Sbjct: 2   VGVDAAPSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIE 47


>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 219

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 399 LSAY-KLFRLGCGCLSLFCFDGPLG 328
           + AY +  R+GC CL L C+DGP G
Sbjct: 86  VEAYVRCLRMGCRCLELDCWDGPDG 110


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 119  GVVENPDRKGFTVVYKKAK---ATRKPAKNLIRRPF--KAGARRSLYKVKSC*RLTTTAQ 283
            GV E   ++  T + + A+   ++  P  + I  PF  +  AR +   V    +LTT  +
Sbjct: 1085 GVQEALAKRALTPILEDAEGRSSSPTPVSDTIEDPFNFQKNARSTSTPVPENTKLTTRQE 1144

Query: 284  TYARLPFVVLQPSSAPRG 337
              AR P V ++PS    G
Sbjct: 1145 KMARQPMVCVKPSLGGEG 1162


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 119 GVVENPDRKGFTVVYKKAK---ATRKPAKNLIRRPF--KAGARRSLYKVKSC*RLTTTAQ 283
           GV E   ++  T + + A+   ++  P  + I  PF  +  AR +   V    +LTT  +
Sbjct: 434 GVQEALAKRALTPILEDAEGRSSSPTPVSDTIEDPFNFQKNARSTSTPVPENTKLTTRQE 493

Query: 284 TYARLPFVVLQPSSAPRG 337
             AR P V ++PS    G
Sbjct: 494 KMARQPMVCVKPSLGGEG 511


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 YQKAR*KLNPPSIQGWCQEVTV 243
           YQK    LNP S  GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 102  FTRKPLVSWRTLTGR 146
            FTRK L  WRT+TGR
Sbjct: 1808 FTRKGLGPWRTITGR 1822


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +2

Query: 20  KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKN 199
           +K ++KK       N    + +R N  ++KK     E+P  +   ++YK  + TRKP + 
Sbjct: 10  EKFDMKKNEPAPIANKYKAYLYRTNKQMNKKQ----EHPVTQRKQMIYKPGRMTRKPGRL 65

Query: 200 LIRRPFKAGARRS 238
           + RR  +   + S
Sbjct: 66  VTRRTSRVTLKTS 78


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 181 QKAR*KLNPPSIQGWCQEVTVQSEELLKANHYRTDLCKATLRRASAILRS 330
           ++ R + N  + Q   QE+ ++ E+   A  +   LCK TL RA    R+
Sbjct: 33  KRRRKRDNEANWQAHTQEIDLEGEDGPLAKRHSDGLCKDTLTRAKVSARA 82


>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
          Length = 505

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 269 TTTAQTYARLPFVVLQPSSAPRG-PSKQKRLRQPQPSRNN 385
           T T Q  AR+     + + +P G P++ +R   PQPS+N+
Sbjct: 254 TITNQQTARVATPTSEAAPSPPGTPTQPRRSNLPQPSKNH 293


>SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 258 VKG*PLPHR----PMQGYPSSCFSHPPLPEAHQSKKG 356
           V+G P P +    P QGYP+    +PP  + +Q+  G
Sbjct: 38  VQGYPPPQQGYPPPQQGYPAQQQGYPPAQQGYQTTGG 74


>SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = +2

Query: 110 KAVGVVENPDRKGFTVVYKKAKATRKPA-----KNLIRRPFKAGARRSLYKVKSC*RLTT 274
           KA    E P +K      KK KAT+KPA      N  + P K   +++    K       
Sbjct: 210 KAAVKAEKP-KKAKKPAAKKPKATKKPAAKTTPSNKAKSPKKPAPKKATKSPKK-----A 263

Query: 275 TAQTYARLPFVVLQPSSAPRGPSKQKRLRQP 367
             +  A+ P  V +P  A + P+ +K  ++P
Sbjct: 264 AKKPVAKKP-AVAKPKKATKKPTAKKAAKKP 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,759,696
Number of Sequences: 59808
Number of extensions: 265108
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)