Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20567
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.036
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   0.78 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   4.2  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   4.2  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   4.2  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   4.2  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   4.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   4.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.036
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 269  TTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 385
            TT A  YAR+  +     ++ + P  Q++  Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2  NNAFLVKKRNIKKPFSKEP 58
          N+  L+KKRN   PF K P
Sbjct: 10 NSCDLLKKRNENDPFLKRP 28


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 175 LCFLVHYCESLPVRV 131
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 175 LCFLVHYCESLPVRV 131
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 175 LCFLVHYCESLPVRV 131
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 175 LCFLVHYCESLPVRV 131
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 175 LCFLVHYCESLPVRV 131
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 109 LVNQAVVPEGVEVSHIVRLLAERLFDIALLHKECIV 2
           L+N A +   V + +   L  +++FDI LL   C++
Sbjct: 88  LINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 2   NNAFLVKKRNIKKPFSK 52
           N+  L+KKRN   PF K
Sbjct: 131 NSCDLLKKRNENDPFLK 147


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 314  QPSSAPRGPSKQKRLRQPQPSR 379
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 405 NLLSAYKLFRLGCGCL 358
           NLL+AY  F+L   C+
Sbjct: 56  NLLNAYVRFKLVTDCI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,953
Number of Sequences: 438
Number of extensions: 1964
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)