Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20567
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            53   9e-08
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    50   8e-07
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    29   0.94 
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   1.6  
At1g06420.1 68414.m00679 expressed protein ; expression supporte...    29   1.6  
At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family prot...    28   2.9  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    27   5.0  
At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containi...    27   6.6  
At2g29605.1 68415.m03595 hypothetical protein                          27   6.6  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    26   8.7  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
 Frame = +2

Query: 2   NNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKA 172
           NN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +      +   +   K 
Sbjct: 16  NNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKT 75

Query: 173 KATRKPA----KNLIRRPF 217
           K   KP     K+++++ F
Sbjct: 76  KKQNKPKLSVNKSILKKEF 94



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 268 NHYRTDLCKATLRRASAILRSQR 336
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
 Frame = +2

Query: 2   NNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKA 172
           NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +      +G  +   K 
Sbjct: 16  NNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKT 75

Query: 173 KATRKPA----KNLIRRPF 217
           K   KP     K+++++ F
Sbjct: 76  KRQNKPKLSVNKSILKKEF 94



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 268 NHYRTDLCKATLRRASAILRSQR 336
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 HRPMQGYPSSCFSHPPLPEAHQ 344
           H P   Y  SC+ HPP P  +Q
Sbjct: 73  HPPHASYAPSCYVHPPFPVGYQ 94


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 25  AQYQKAVQQGAEQCD*PPLLQVQRLDSQESRWCRG 129
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At1g06420.1 68414.m00679 expressed protein ; expression supported
           by MPSS
          Length = 221

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 110 KAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKSC 259
           K  G+V N D  G   V  + K  + P K   RR FK+    +  +V  C
Sbjct: 110 KVSGIVSNKDEDG---VDSREKKKKNPVKENTRRVFKSKGENAAKEVTQC 156


>At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family protein
           low similarity to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) [Rhodopseudomonas
           sphaeroides] {Rhodobacter sphaeroides}; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 300

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 236 SLYKVKSC*RLTTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 373
           S ++   C R          +PF+ + PS A       KRLR P+P
Sbjct: 43  SSFRFCPCGRRHFIGAAMTSMPFLPISPSHASTSTEDLKRLRPPKP 88


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 20  KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP 190
           K+ + ++   KEP+  T     R N    KKA  V E   RK      KK +  +KP
Sbjct: 770 KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKP 826


>At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 302

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 270 PLPHRPMQGYPSS-CFSHPPLPEAHQSKK 353
           PLP+RP++G  SS     PP  +AH   K
Sbjct: 48  PLPNRPLRGERSSNSHREPPARQAHNLGK 76


>At2g29605.1 68415.m03595 hypothetical protein
          Length = 401

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 148 SLPVRVLHDTNGFLVNQAVVPEGVEVSHI 62
           ++ +  L DTNG  VNQ  +P G + +HI
Sbjct: 121 NMGMSALDDTNGLTVNQLPIPNG-QQNHI 148


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 242 YKVKSC*RLTTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNNL 388
           Y+ +SC   +T  Q  +  P  +    ++PR P+  +    P PSR +L
Sbjct: 789 YETRSC---STGKQRKSGFPSALRNREASPRMPNLAEERLNPSPSRRSL 834


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,772,189
Number of Sequences: 28952
Number of extensions: 180558
Number of successful extensions: 467
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)