Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20566
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 94 1e-20
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 65 7e-12
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 65 9e-12
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 56 4e-09
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 54 1e-08
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 52 9e-08
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 40 4e-04
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 28 0.92
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 28 1.2
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 3.7
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 4.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 8.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 8.6
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 94.3 bits (224), Expect = 1e-20
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A MI + +KN+ VVAGGG+ +M++ +LR L ++GK+Q +AA AR+ E IPRQL D
Sbjct: 397 AIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCD 456
Query: 186 NAGLDGTGLLNKLRQKHAAGE 248
NAG D T +LNKLR +HA GE
Sbjct: 457 NAGFDSTNILNKLRMQHAKGE 477
Score = 58.8 bits (136), Expect = 6e-10
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +2
Query: 257 GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKN 397
GVD+ S V +NF K VWEP+ VK NA+ +A EA ILSVDETIKN
Sbjct: 481 GVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKN 527
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 65.3 bits (152), Expect = 7e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + R +K A++AGGGS +++ L QL G+E + + A + A E IP LA+
Sbjct: 396 ALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAE 455
Query: 186 NAGLDGTGLLNKLRQKHAAGEHT 254
NAGL+ ++ +LR +HA GE T
Sbjct: 456 NAGLNAIQVVTELRSRHANGEKT 478
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 64.9 bits (151), Expect = 9e-12
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +3
Query: 21 RRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLADNAGLD 200
+RT+++ VV GGG+V+ + +L + L +EQL++A A+A IPR LA NA D
Sbjct: 405 KRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIPRTLAVNAAKD 464
Query: 201 GTGLLNKLRQKHAAGEHTTV 260
T L KLR HAA ++ V
Sbjct: 465 STELTAKLRAYHAASQNAEV 484
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +2
Query: 257 GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 394
G+D+++G + DN V EP++ KL ++ +A EA IL +D +IK
Sbjct: 496 GLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +3
Query: 15 IGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLADNAG 194
I + +K++ ++ G G+ DMQ+C L S + G Q ++ AFE +PR +++NAG
Sbjct: 398 IVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAG 457
Query: 195 LDGTGLLNKLRQKH 236
LD T +++KL H
Sbjct: 458 LDPTDVISKLYAAH 471
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + R + + GGG+ +M + L + G Q AVA A E IPR L
Sbjct: 392 AMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQ 451
Query: 186 NAGLDGTGLLNKLRQKHAAGEHT 254
N G + L +LR KHA G+H+
Sbjct: 452 NCGANPIKALTELRAKHAEGQHS 474
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 221 TEAEARRW-GAHD-GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 394
TE A+ G H G+D +G VVD VWEP VKL ++ A E+ +L VD+ +
Sbjct: 462 TELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVS 521
Query: 395 NVKGGEE 415
V+ E
Sbjct: 522 GVRKHSE 528
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 51.6 bits (118), Expect = 9e-08
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + +T+ V GGG +M + + GK+ ++V+A A+A +P LAD
Sbjct: 389 ALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILAD 448
Query: 186 NAGLDGTGLLNKLRQKHAAGEHT 254
NAG D + L+ +L+ H G T
Sbjct: 449 NAGFDSSELVAQLKAAHYDGNDT 471
Score = 31.5 bits (68), Expect = 0.099
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 197 GRDRTPQ*TEAEARRWGAHD--GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQI 370
G D + + +A + +D G+D+ GE+ D AK + E +K VS+ E +
Sbjct: 451 GFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLL 510
Query: 371 LSVDETIK 394
L VD +K
Sbjct: 511 LRVDTILK 518
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 21 RRTIKNDAVVAGGGSVDMQICAHLRS--XCLQLAGKEQLSVAAVARAFEAIPRQLADNAG 194
+ ++++ ++ G G+ ++ AHLR+ ++ GK ++ V A A A IP+ LA N+
Sbjct: 398 KNAVEDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSS 457
Query: 195 LDGTGLLNKLRQKHAAG 245
D + L+++ + G
Sbjct: 458 YDTQDAIVALQEEASEG 474
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 28.3 bits (60), Expect = 0.92
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 276 ERW--WITLRSVCGSRPSSSLTP*VPPA-RPPL 365
E W W T+RS CG P + +PPA PP+
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 30 IKNDAVVAGG-GSVDMQICAHLRSXCLQLAGKEQLSVAAVA 149
+KN +V G SVDMQ+ HL++ + + G+E + V ++
Sbjct: 19 LKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLS 59
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 123 EQLSVAAVARAFEAIPRQLADNAGLDGTGLLNKLRQ 230
++L V V +A + + +NAGL+G ++ KL++
Sbjct: 468 QKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKE 503
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 312 SRPSSSLTP*VPPARPP 362
S PSSS TP PP PP
Sbjct: 3 SAPSSSTTPASPPTSPP 19
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 8.6
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +3
Query: 255 TVWTLSVERWWITLRSVC 308
TVW + WW+++ ++C
Sbjct: 1528 TVWVAHLIYWWVSIMALC 1545
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -1
Query: 304 TLRKVIHHLSTDNVHTVVCSPAACFCLSLLRSPVPSRPALSAS*RGMASNARATAATDSC 125
TLR ++HHL + + T++ S SL S PS LS + + S+ + + + S
Sbjct: 127 TLRTLLHHLPSQEISTLLSS-------SLTSS--PSNSGLSLD-KSLPSSPKGDSPSLSS 176
Query: 124 SLPA 113
SLP+
Sbjct: 177 SLPS 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,596
Number of Sequences: 5004
Number of extensions: 44319
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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