Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20566
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)              104   5e-23
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)                       52   4e-07
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   51   8e-07
SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_33012| Best HMM Match : DUF1388 (HMM E-Value=2.6e-18)               28   5.1  
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)             28   5.1  
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            28   6.7  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           28   6.7  
SB_53602| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)                  27   8.9  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  104 bits (250), Expect = 5e-23
 Identities = 48/77 (62%), Positives = 60/77 (77%)
 Frame = +3

Query: 6   AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
           A MI RR +KNDAVVAGGG+++M++  +LR     +AGKEQL + A+A+AFE IPRQL D
Sbjct: 36  AIMIVRRAMKNDAVVAGGGAIEMELSKYLRDYSRTIAGKEQLLIGAMAKAFEIIPRQLCD 95

Query: 186 NAGLDGTGLLNKLRQKH 236
           NAG D T +LNKLRQKH
Sbjct: 96  NAGFDATNILNKLRQKH 112


>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 30/83 (36%), Positives = 45/83 (54%)
 Frame = +3

Query: 6   AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
           A  + R  +K  A++AGGG+ ++++   L      L   +   V A A A E IP  LA+
Sbjct: 88  ALCVIRCLVKKRALIAGGGAPEIEVALRLAEYSQTLTSMDAYCVRAFAEALEIIPYTLAE 147

Query: 186 NAGLDGTGLLNKLRQKHAAGEHT 254
           NAGL+    + +LR +HA GE T
Sbjct: 148 NAGLNPIATVTELRNRHAQGEVT 170


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 32/91 (35%), Positives = 44/91 (48%)
 Frame = +3

Query: 6   AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
           A  + R  I +  +V GGG+ +M +   L      +AG +Q    AVA+  E IPR L  
Sbjct: 183 AMNVARNVIVDPRLVPGGGACEMALAHALTEKAKLVAGVQQWPYKAVAKGLEVIPRTLIQ 242

Query: 186 NAGLDGTGLLNKLRQKHAAGEHTTVWTLSVE 278
           N G +    +  LR KHAA E  T W +  E
Sbjct: 243 NCGANTIRTITALRAKHAA-EGNTSWGIDGE 272


>SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)
          Length = 189

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/77 (32%), Positives = 43/77 (55%)
 Frame = +3

Query: 6   AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
           A  + +R +++  +V GGG+V+  +  +L +    L  +EQL++A  A +   IP+ L+ 
Sbjct: 30  AICVVKRVLESKTLVPGGGAVEAALSIYLENFATSLGSREQLAIAEFANSLLVIPKILSV 89

Query: 186 NAGLDGTGLLNKLRQKH 236
           NA  D   L+ KLR  H
Sbjct: 90  NAAKDSADLVAKLRAFH 106



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +2

Query: 257 GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 394
           G+D++ G V DN    V+EPA+ K+ ++  A EA   IL +D+ IK
Sbjct: 122 GLDLVEGTVRDNKKAGVFEPAICKIKSLKFATEAAITILRIDDMIK 167


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 26/83 (31%), Positives = 43/83 (51%)
 Frame = +3

Query: 6   AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
           A  +  +T K +  V GGG+ ++ +   +     +  GKE  ++ + A A   +P  +AD
Sbjct: 390 ALCVLNQTGKENKTVNGGGASEVLMAHAVSQLAAKTPGKEAAAMESFATALRQLPTIIAD 449

Query: 186 NAGLDGTGLLNKLRQKHAAGEHT 254
           NAG D   L+ KLR  H  G++T
Sbjct: 450 NAGYDSADLVAKLRAAHTQGKNT 472


>SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +3

Query: 114 AGKEQLSVAAVARAFEAIPRQLADNAGLDGTGLLNKLRQKHAAGE 248
           AG EQ ++A  A + E +PR LADNAG+  T L++KL   H  G+
Sbjct: 3   AGLEQYAIAKFAESLECVPRALADNAGVKATELISKLYAAHQEGK 47


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +3

Query: 6   AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
           A  + R  I +  +V GGG+ +M +   L      +AG +Q    AVA+  E IPR L  
Sbjct: 240 AMNVARNVIVDPRLVPGGGACEMALAHALTEKAKLVAGVQQWPYKAVAKGLEVIPRTLIQ 299

Query: 186 NAGLDGTGLLNKLR 227
           N G +    +  LR
Sbjct: 300 NCGANTIRTITALR 313


>SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 165 IPRQLADNAGLDGTGLLNKLRQKHAAGEHT 254
           +P  +ADNAG D   L+ KLR  H  G++T
Sbjct: 1   LPTIIADNAGYDSADLVAKLRAAHTQGKNT 30


>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 90  LRSXCLQLAGKEQLSVAAVARAFEAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTTVW 263
           LR   +   G ++ S   V   F+ +PR      GL G GLL +    HAA    T W
Sbjct: 475 LRFNSIDDDGVDRRSHMGVYDLFDGLPRNPMGRTGLIGRGLLGRWGPNHAADPIVTRW 532


>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 229 RSTPLGSTRRCGRYQWRGGG*LCEVC 306
           +S PLGSTRR  R++W+     C+VC
Sbjct: 292 KSVPLGSTRRIRRWEWQ----YCDVC 313


>SB_33012| Best HMM Match : DUF1388 (HMM E-Value=2.6e-18)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 161 GHPSSAGRQCRPGRDRTPQ*TEAEARRWGAHDGVDVISGEVV 286
           G   + GR   PGRD+TP   + +  RWG   G + + G ++
Sbjct: 162 GRDKTPGRDKTPGRDKTPGRDKTQG-RWGG--GGERVRGHII 200


>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
          Length = 504

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 268 NVHTVVCSPAACFCLSLLRSPVPSRPALSAS*RGMASNA 152
           N   V C    C C+  L  P+P R   SAS    ASNA
Sbjct: 390 NAFCVQCLCVQCLCVKCLLRPMPLRQTPSAS-NASASNA 427


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +2

Query: 149 PRV*GHPSSAGRQCRPGRDRTPQ*TEAEARRWGAHDGVDVISGEVVDNFAKCVWEPALVK 328
           PR     S AG+Q         Q  E   R     +G+D  +G  ++ F   + EP L K
Sbjct: 468 PRTLYQNSFAGKQGLQQFLTQLQIMETSWRNSNLSEGIDGRTGLPINPFVHEILEPLLAK 527

Query: 329 LNAVSAACEATAQILSVDETI 391
            + +    +   Q+L +++ +
Sbjct: 528 KDTLHCVFQCVTQVLRINQVL 548


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 310 PHTLRKVIHHLSTDNVHTVVCSPAACFCLSLLRSPV 203
           PH  R V HH       +V C+P     LS+++S V
Sbjct: 728 PHVARMVQHHRYAPTGLSVYCTPNTRLMLSMVKSQV 763


>SB_53602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 159 EAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTTVWTLSVE 278
           + + + L +  GL G  +LNKL+  +   EH  V TL ++
Sbjct: 10  DIVAKNLKEPKGLGGLIVLNKLKTHNEILEHQAVETLGIQ 49


>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 213 GVRSRPGLHCLPADEGWPQTRGPLPPRTAAPCQP 112
           G++  PG   LP   G P  +GP+ P    P  P
Sbjct: 142 GLQGAPGAAGLPGAPGLPGPQGPMGPPGPEPIMP 175


>SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)
          Length = 512

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 345 PPARPPLRFYQWMRPSRMSRAVKRRRCLVAAWAALVW 455
           PPARPPL   Q  + S++++ +     +    A + W
Sbjct: 316 PPARPPLAAAQQTKQSKITKTITDAAVITGLVAGIGW 352


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 90   LRSXCLQLAGKEQLSVAAVARAFEAIPRQLADNAGLDGTGLLNKLRQK-HAAGEHTTV 260
            LR   L+       ++  VARA+EA+ +Q+     L+ +  +N L+Q  +  G+HT +
Sbjct: 867  LRRKFLEEVNASLKNLQYVARAYEAVEKQM---KSLESSHAVNALKQNMNNGGDHTKI 921


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,070,861
Number of Sequences: 59808
Number of extensions: 424246
Number of successful extensions: 1206
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)