Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20566
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 96 2e-20
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 64 9e-11
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 61 5e-10
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 57 1e-08
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 54 7e-08
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 50 2e-06
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 48 4e-06
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 46 2e-05
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 46 2e-05
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 44 1e-04
At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ... 32 0.26
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 31 0.59
At3g09000.1 68416.m01053 proline-rich family protein 29 1.8
At3g46930.1 68416.m05093 protein kinase family protein contains ... 29 3.2
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 28 5.5
At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2... 27 7.3
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot... 27 7.3
At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1... 27 7.3
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi... 27 9.6
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 95.9 bits (228), Expect = 2e-20
Identities = 45/78 (57%), Positives = 55/78 (70%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A MI RR +KN VV GGG++DM+I +LR +AGK QL + + A+A E IPRQL D
Sbjct: 395 AIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKALEVIPRQLCD 454
Query: 186 NAGLDGTGLLNKLRQKHA 239
NAG D T +LNKLRQKHA
Sbjct: 455 NAGFDATDVLNKLRQKHA 472
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 245 GAHDGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKNVKGGEEAQ 421
GA GVD+ +G + D+FA VWEPA+VK+NA++AA EA ILSVDET+KN K E AQ
Sbjct: 478 GASYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK-SESAQ 535
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 63.7 bits (148), Expect = 9e-11
Identities = 34/87 (39%), Positives = 48/87 (55%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + R IKN +V GGG+ ++ + A L+ + G E+ A A AFEAIPR LA
Sbjct: 394 AMSVARNIIKNPKLVPGGGATELTVSATLKQKSATIEGIEKWPYEAAAIAFEAIPRTLAQ 453
Query: 186 NAGLDGTGLLNKLRQKHAAGEHTTVWT 266
N G++ + L+ KHA GE+ WT
Sbjct: 454 NCGVNVIRTMTALQGKHANGEN--AWT 478
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 248 AHDGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKNVK 403
A G+D +G + D +W+ VK A EA +L +D+ + +K
Sbjct: 476 AWTGIDGNTGAIADMKESKIWDSYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A I +RT++++ VVAGGG+V+ + +L L +EQL++A A A IP+ LA
Sbjct: 398 ALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLAV 457
Query: 186 NAGLDGTGLLNKLRQKH 236
NA D T L+ KLR H
Sbjct: 458 NAAKDATELVAKLRAYH 474
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +2
Query: 221 TEAEARRWGAHDGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKNV 400
T+A+ + + + G+D+++G + +N V EPA+ K+ + A EA IL +D+ IK V
Sbjct: 479 TKADKKHYSSM-GLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLV 537
Query: 401 KGGEEAQ 421
K + +
Sbjct: 538 KDESQGE 544
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + R + ++AGGG+ ++++ L + L G E V + A A E IP LA+
Sbjct: 405 ALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKSFAEALEVIPYTLAE 464
Query: 186 NAGLDGTGLLNKLRQKHAAGE 248
NAGL+ ++ +LR KHA GE
Sbjct: 465 NAGLNPIAIVTELRNKHAQGE 485
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + +T+ + V+ GGG +M + + + AGK+ ++ A +RA AIP +AD
Sbjct: 388 ALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELARKTAGKKSHAIEAFSRALVAIPTTIAD 447
Query: 186 NAGLDGTGLLNKLRQKH 236
NAGLD L+ +LR +H
Sbjct: 448 NAGLDSAELVAQLRAEH 464
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 21 RRTIKNDAVVAGGGSVDMQICAHLRSXCLQ-LAGKEQLSVAAVARAFEAIPRQLADNAGL 197
+ TI+++ VV G G+ ++ HL + + + G+ QL V A A A +P+ LA+NAGL
Sbjct: 401 KNTIEDECVVLGAGAFEVAARQHLLNEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGL 460
Query: 198 DGTGLLNKLRQKHAAG 245
D ++ L +H G
Sbjct: 461 DTQDVIISLTSEHDKG 476
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 21 RRTIKNDAVVAGGGSVDMQICAHLRSXCLQ-LAGKEQLSVAAVARAFEAIPRQLADNAGL 197
+ T++++ VV G G+ ++ HL + + + G+ QL V A A A +P+ LA+NAGL
Sbjct: 402 KNTLEDECVVLGAGAFEVAARQHLINEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGL 461
Query: 198 DGTGLLNKLRQKHAAG 245
D ++ L +H G
Sbjct: 462 DTQDVIISLTSEHDKG 477
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + R I+N ++V GGG+ ++ + + + G EQ ++ A A A +++P LA+
Sbjct: 325 ALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAE 384
Query: 186 NAGLDGTGLLNKLRQK 233
N+GL L+ ++ +
Sbjct: 385 NSGLQPIETLSAVKSQ 400
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +3
Query: 6 AFMIGRRTIKNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLAD 185
A + R I+N ++V GGG+ ++ + + + G EQ ++ A A A +++P LA+
Sbjct: 401 ALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAE 460
Query: 186 NAGLDGTGLLNKLRQK 233
N+GL L+ ++ +
Sbjct: 461 NSGLQPIETLSAVKSQ 476
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/71 (25%), Positives = 38/71 (53%)
Frame = +3
Query: 33 KNDAVVAGGGSVDMQICAHLRSXCLQLAGKEQLSVAAVARAFEAIPRQLADNAGLDGTGL 212
++ +V G + ++++ L+ G ++ ++ A +FE +P+ LADNAGL+ +
Sbjct: 407 RDSRIVPGAAATEIELAQRLKEYANAEIGLDKYAITKYAESFEFVPKTLADNAGLNAMEI 466
Query: 213 LNKLRQKHAAG 245
+ L H +G
Sbjct: 467 IAALYTGHGSG 477
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 257 GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETI 391
G+D+ G D VW+ KL A+ A +A +L VD+ I
Sbjct: 482 GIDLEEGACKDVSETKVWDLFATKLFALKYASDAACTVLRVDQII 526
>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
protein
Length = 253
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 232 STPLGSTRRCGRYQWRGGG*LCEVCVGAGPRQA*RRECRLRGHRSDSISG 381
S P + C RY W GG L +V VG G R++ +R S S+SG
Sbjct: 51 SQPRHFCKACRRY-WTHGGTLRDVPVGGGTRKSAKRSRTCSNSSSSSVSG 99
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 31.1 bits (67), Expect = 0.59
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 39 DAVVAGGGSVDMQICAHLRSXCLQLA--GKEQLSVAAVARAFEAIPRQLADNAGLDGTGL 212
+ +V GGG+ + + + L EQ+ VA A A +A NAG+DG+ +
Sbjct: 440 EGIVPGGGATYIHLLDEIPRIKKNLMEDSYEQIGADIVAMALTAPAMAIATNAGVDGSVV 499
Query: 213 LNKLRQ 230
+ K R+
Sbjct: 500 VQKTRE 505
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 92 PVLXSATGWQGAAVRGGSGPRV*GHPSSAGRQCRPGRDRTP 214
P + SA G + ++ G GP G ++ + C P R R P
Sbjct: 327 PGVASAPGSRSGSIERGGGPTSGGSGNARRQSCSPSRGRAP 367
>At3g46930.1 68416.m05093 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 372 YQWMRPSRMSRAVKRRRCLVAAWAALVWD 458
Y+WM P + R R+C V ++ L+W+
Sbjct: 324 YRWMAPEVLKRIPHGRKCDVYSFGLLLWE 352
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 247 SPAACFCLSLLRSPVPSRPALSAS*RGMASNARATAATDSCSLP 116
SP A LS L+SP+PS ++A +S T + SLP
Sbjct: 288 SPTAQISLSSLKSPIPSPATITAPPPPFSSPLSQTTPSPKPSLP 331
>At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2)
identical to cytochrome P450 81F1 (91A2) (SP:O65790)
[Arabidopsis thaliana]
Length = 500
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 219 KLRQKHAAGEHTTVWTLSVERWWITLRSVCGSRPSSS 329
+L K+ A HTTV T W LR +C SS
Sbjct: 99 QLTAKYVAYNHTTVGTAPYGDHWRNLRRICSQEILSS 135
>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
pollen-specific protein precursor -Nicotiana tabacum,
PID:g19902; contains Pfam profile: PF00394 Multicopper
oxidase
Length = 589
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 566 YYIRSTYNTKSETVQTRAT*VIIVCY*QCY*PLSSPIP 453
YYI ++ +ETV R T V I+ Y P+S P+P
Sbjct: 286 YYIVASARFVNETVWQRVTGVAILHYSNSKGPVSGPLP 323
>At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1
[Coturnix coturnix] GI:10441650, Yippee protein
[Drosophila melanogaster] GI:5713279; contains Pfam
profile PF03226: Yippee putative zinc-binding protein
Length = 128
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 218 IEESGPVQACIVCQ----LTRDGLKRAGHCRHGQLLL 120
I+ G V +C CQ +T D + ++ HC+HG+ L
Sbjct: 7 IDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYL 43
>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 899
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 47 SRWRRISGHANLCPSPVLXSATGWQGAAV 133
+RW RI G +C +L +QG+ V
Sbjct: 787 ARWSRIKGDLTVCSEALLKQVRSYQGSEV 815
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,056
Number of Sequences: 28952
Number of extensions: 274333
Number of successful extensions: 787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -