Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20565
(695 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 71 9e-15
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 71 9e-15
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 71 9e-15
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 70 2e-14
AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 25 0.45
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.4
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.4
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.4
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.4
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 23 3.2
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 21 7.3
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 489 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 565 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 641 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 114
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 190
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 266
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 342
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 384 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 418
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 460 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 494
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 536 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 570
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 612 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 646
Score = 68.5 bits (160), Expect = 5e-14
Identities = 32/38 (84%), Positives = 34/38 (89%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQR IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 413 KEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLV 450
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 70.9 bits (166), Expect = 9e-15
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 5 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 52 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 86
Score = 56.8 bits (131), Expect = 2e-10
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKE 334
+ G P +QQR IFAGKQLEDGRTLSDYNIQKE
Sbjct: 81 KEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112
Score = 25.8 bits (54), Expect = 0.34
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 228 KIQDKEGIPP 257
KIQDKEGIPP
Sbjct: 1 KIQDKEGIPP 10
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 69.7 bits (163), Expect = 2e-14
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
Score = 59.3 bits (137), Expect = 3e-11
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKE 334
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
>AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless
protein.
Length = 325
Score = 25.4 bits (53), Expect = 0.45
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 561 VVTVLH-HRHEHSGAALLAVHSRRRRWILP 475
VV+ H H+H+H GAA+ RRR P
Sbjct: 18 VVSAEHPHQHQHYGAAVQVPQGGRRRAARP 47
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
L GTY ++F +V L VV HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
L GTY ++F +V L VV HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 22.6 bits (46), Expect = 3.2
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 368 HHEASTPGGGWIPSGYCSPR 309
HH P GG P G PR
Sbjct: 63 HHYGGPPSGGQPPQGMPYPR 82
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 21.4 bits (43), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 340 GGFLLDIVVREGTSIFQLLSS 278
GGFLL VV+ G ++ LSS
Sbjct: 108 GGFLLCKVVKYGQTLGPYLSS 128
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,676
Number of Sequences: 336
Number of extensions: 2877
Number of successful extensions: 36
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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