Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20565
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 103 3e-23
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 103 3e-23
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 71 2e-13
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 71 2e-13
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 71 2e-13
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 46 7e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 35 0.013
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 0.84
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 26 4.5
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 5.9
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 26 5.9
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 25 7.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 103 bits (246), Expect = 3e-23
Identities = 51/95 (53%), Positives = 61/95 (64%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 418
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIK 92
Query: 419 XXXXXXXLAVLRFYKVDENGKIHRLRRECTASSAA 523
LAVL++YKV+++G + RLRREC A+
Sbjct: 93 HKHKKVELAVLKYYKVEDDGSVKRLRRECPNCGAS 127
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 481 DPPSAARVHSE--QCGAGVFMAVMEDRHYCGKCHSTM 585
D S R+ E CGA FMA +DR YCG+CH T+
Sbjct: 110 DDGSVKRLRRECPNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 103 bits (246), Expect = 3e-23
Identities = 51/95 (53%), Positives = 61/95 (64%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 418
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIK 92
Query: 419 XXXXXXXLAVLRFYKVDENGKIHRLRRECTASSAA 523
LAVL++YKV+++G + RLRREC A+
Sbjct: 93 HKHKKVELAVLKYYKVEDDGSVKRLRRECPNCGAS 127
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 481 DPPSAARVHSE--QCGAGVFMAVMEDRHYCGKCHSTM 585
D S R+ E CGA FMA +DR YCG+CH T+
Sbjct: 110 DDGSVKRLRRECPNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 114
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 190
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 266
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVK+KIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 342
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 45.6 bits (103), Expect = 7e-06
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
K LTGK I L+++P+D + +K ++++KEGIPP
Sbjct: 6 KTLTGKEIELDIDPNDKVSRIKERVEEKEGIPP 38
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 33 KEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 260 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 43 RQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 0.84
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 663 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 559
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 165 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRTTISRRNP 338
L T + + PSDT N+ + E I G +LES+ D S+ ++S P
Sbjct: 99 LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILEST-SSDFQSKDSLSTTQP 155
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 285 FPAKINLC*LEGFPLCLEF*LS 220
FP+K+ L L PLCL+F LS
Sbjct: 582 FPSKLYLVYLSNCPLCLKFKLS 603
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 347 GGGWIPSGYCSPRGYVHLPAAFQQRSTSVDWRDSLFVLNF 228
G G + +G C+P YVH + +R+ + D L+ L F
Sbjct: 375 GIGIVLAGACTPIIYVHYNRVYTRRNGVMSPEDRLYPLFF 414
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 171 GKTITLEVEPSDTIENVKAKIQDKEGIPP 257
GK LE+EP++T +K ++ +PP
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPP 38
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 458 YKVDENGKIHRLRRECTASSAAPECSW 538
++VD N H+ E ASS + EC W
Sbjct: 97 FEVDWNNLRHQACSEIRASSMSGECRW 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,530
Number of Sequences: 5004
Number of extensions: 48839
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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