Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20565
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 71 9e-13
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 71 9e-13
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 70 2e-12
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 69 3e-12
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 34 0.096
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5) 31 0.89
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 31 0.89
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 30 1.6
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 30 1.6
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_947| Best HMM Match : Phage_term_smal (HMM E-Value=2.8) 28 6.3
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 113 bits (272), Expect = 1e-25
Identities = 57/93 (61%), Positives = 63/93 (67%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 418
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV NY+TP
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIK 92
Query: 419 XXXXXXXLAVLRFYKVDENGKIHRLRRECTASS 517
LAVL++YKVDENGKI RLRREC + S
Sbjct: 93 HKKKKVKLAVLKYYKVDENGKITRLRRECPSES 125
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1
Query: 508 SEQCGAGVFMAVMEDRHYCGKCHSTMVF 591
SE CGAGVFMA DR YCGKC T VF
Sbjct: 123 SESCGAGVFMASHFDRQYCGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 413 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 489 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 114
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 190
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 266
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 342
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 384 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 418
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 460 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 494
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 114
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 190
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 266
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 342
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 38
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +3
Query: 174 KTITLEVEPSDTIENVKAKIQDKEGIPP 257
KT TL+VE SDT+E+VK KIQ++EGIPP
Sbjct: 86 KTFTLDVEASDTVESVKEKIQNREGIPP 113
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 349
+ G P QRL++ ++L D R+L+DYNI++ S LHL
Sbjct: 108 REGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVEPSDTIENVKAKIQDKEGIPP
Sbjct: 82 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 116
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQK 331
+ G P +QQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 111 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
P +QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 3 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 245 GNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
G P +QQRL+F G+ L D T I +TLHL+
Sbjct: 106 GYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLI 141
>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
Length = 425
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 582 RAVTLPAVVTVLHHRHEHSGAALLAVHSRRRRWILPFSSTL*NLRTASLTFFFL 421
R T P+ VTV+H L +H+ R+ LPF+ LR SL F +
Sbjct: 297 RKETQPSCVTVVHTTLREPSLTLTHIHTTLRKPSLPFTHIHTTLRKPSLPFMHI 350
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYN 322
+ G P+ +QRLIF GK L+D + L +++
Sbjct: 19 EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKES 337
P +LI+AGK L D L +YNI ++S
Sbjct: 106 PHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 245 GNPSNQQRLIFAGKQLEDGRTLSDYN 322
G P+ +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 165 LTGKTITLEVEPSDTIENVKAKIQDKE 245
LTG L V P +TI +VKAKIQ E
Sbjct: 8 LTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_947| Best HMM Match : Phage_term_smal (HMM E-Value=2.8)
Length = 237
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 600 VVFEDHRAVTLPAVVTVLHHRHEHSGAALLAVHSRRRRWIL 478
V+F DH +VT H + H+G + +H R + WIL
Sbjct: 150 VIF-DHGYDVTRLIVTDYHRKLIHAGVEHVFIHMREKFWIL 189
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 564 AVVTVLHHRHEHSGA 520
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,479,276
Number of Sequences: 59808
Number of extensions: 410843
Number of successful extensions: 1281
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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