Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20565
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.4  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 573 TLPAVVTVLHHRHEHSGAALLAVHSRRRR 487
           T+ AVV  L  +  H+ A+  +VHS   R
Sbjct: 596 TINAVVNALAEQAAHASASEESVHSMELR 624


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 347 GGGWIPSGYCSPRGYVHLPA 288
           GG   P GY   +G+VHL A
Sbjct: 77  GGLEEPKGYTLFKGFVHLGA 96


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 573 TLPAVVTVLHHRHEHSGAALLAVHSRRRR 487
           T+ AVV  L  +  H+ A+  +VHS   R
Sbjct: 564 TINAVVNALAEQAAHASASEESVHSMELR 592


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 624 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 538
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 584 WSSKTTTNK*VPSSL*GTLATAVYD 658
           WSSKT TN  V  S+   +    YD
Sbjct: 222 WSSKTETNATVLHSINKVIIHPKYD 246


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 546 HHRHEHSGAALLAVHSRR 493
           HH H H   +L  +H R+
Sbjct: 351 HHHHHHQTQSLQHLHYRQ 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,603
Number of Sequences: 438
Number of extensions: 3482
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)