Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20565
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 103 1e-22
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 101 6e-22
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 100 8e-22
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 75 5e-14
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 75 5e-14
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 75 5e-14
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 75 5e-14
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 75 5e-14
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 70 2e-12
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 70 2e-12
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 70 2e-12
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 70 2e-12
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 70 2e-12
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 70 2e-12
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 70 2e-12
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 70 2e-12
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 70 2e-12
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 70 2e-12
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 70 2e-12
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 70 2e-12
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 70 2e-12
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 70 2e-12
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 66 2e-11
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 59 3e-09
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 47 1e-05
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 44 7e-05
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 43 2e-04
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 43 2e-04
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 42 3e-04
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 38 0.008
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 35 0.059
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical... 34 0.10
At1g53980.1 68414.m06149 polyubiquitin-related contains similari... 33 0.18
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 33 0.24
At1g11970.1 68414.m01383 hypothetical protein 32 0.32
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 31 0.96
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 30 1.7
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 29 2.2
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 29 2.2
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 29 2.2
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 3.9
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 29 3.9
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 29 3.9
At3g31310.1 68416.m03983 hypothetical protein 28 5.1
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 28 6.8
At2g43970.2 68415.m05468 La domain-containing protein contains P... 28 6.8
At2g43970.1 68415.m05467 La domain-containing protein contains P... 28 6.8
At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein c... 28 6.8
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 27 9.0
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 27 9.0
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta... 27 9.0
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 103 bits (247), Expect = 1e-22
Identities = 51/96 (53%), Positives = 61/96 (63%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 418
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV Y+ P
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIK 92
Query: 419 XXXXXXXLAVLRFYKVDENGKIHRLRRECTASSAAP 526
LAVL+FYKVD +GK+ RL++EC + S P
Sbjct: 93 HTHKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGP 128
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +1
Query: 508 SEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDDK 606
S CG G FMA DRHYCGKC +T VFK D+
Sbjct: 123 SVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 155
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 101 bits (241), Expect = 6e-22
Identities = 50/89 (56%), Positives = 58/89 (65%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 418
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV Y+ P
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIK 92
Query: 419 XXXXXXXLAVLRFYKVDENGKIHRLRREC 505
LAVL+FYKVD +GK+ RLR+EC
Sbjct: 93 HKHKKVKLAVLQFYKVDGSGKVQRLRKEC 121
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 517 CGAGVFMAVMEDRHYCGKCHSTMVFKDD 600
CGAG FMA DRHYCGKC T V++ +
Sbjct: 126 CGAGTFMASHFDRHYCGKCGLTYVYQKE 153
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 100 bits (240), Expect = 8e-22
Identities = 49/89 (55%), Positives = 58/89 (65%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 418
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV Y+ P
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIK 92
Query: 419 XXXXXXXLAVLRFYKVDENGKIHRLRREC 505
LAVL+FYK+D +GK+ RLR+EC
Sbjct: 93 HKHKKVKLAVLQFYKIDGSGKVQRLRKEC 121
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 517 CGAGVFMAVMEDRHYCGKCHSTMVFKDD 600
CGAG FMA DRHYCGKC T V++ +
Sbjct: 126 CGAGTFMASHFDRHYCGKCGLTYVYQKE 153
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/72 (62%), Positives = 49/72 (68%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRTTISRR 332
F K LTGKTITLEVE SDTI+NVKAKIQDKE + S LESS +MDV TT SRR
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRR 291
Query: 333 NPPSTWC*GFVV 368
+ TW FVV
Sbjct: 292 SLLFTWSCVFVV 303
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/72 (62%), Positives = 49/72 (68%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRTTISRR 332
F K LTGKTITLEVE SDTI+NVKAKIQDKE + S LESS +MDV TT SRR
Sbjct: 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRR 443
Query: 333 NPPSTWC*GFVV 368
+ TW FVV
Sbjct: 444 SLLFTWSCVFVV 455
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/72 (62%), Positives = 49/72 (68%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRTTISRR 332
F K LTGKTITLEVE SDTI+NVKAKIQDKE + S LESS +MDV TT SRR
Sbjct: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRR 367
Query: 333 NPPSTWC*GFVV 368
+ TW FVV
Sbjct: 368 SLLFTWSCVFVV 379
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/72 (62%), Positives = 49/72 (68%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRTTISRR 332
F K LTGKTITLEVE SDTI+NVKAKIQDKE + S LESS +MDV TT SRR
Sbjct: 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRR 443
Query: 333 NPPSTWC*GFVV 368
+ TW FVV
Sbjct: 444 SLLFTWSCVFVV 455
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/72 (62%), Positives = 49/72 (68%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRTTISRR 332
F K LTGKTITLEVE SDTI+NVKAKIQDKE + S LESS +MDV TT SRR
Sbjct: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRR 367
Query: 333 NPPSTWC*GFVV 368
+ TW FVV
Sbjct: 368 SLLFTWSCVFVV 379
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 224
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/38 (81%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQL+DGRTL+DYNIQKESTLHLV
Sbjct: 111 KEGVPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV 148
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEG+PP
Sbjct: 82 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPP 116
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/40 (75%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
Frame = +2
Query: 236 RQRGNPSNQQRLIFAGKQLEDGR-TLSDYNIQKESTLHLV 352
++R P +QQRLIFAG+QLEDG TL+DYNIQKESTLHLV
Sbjct: 263 KERIQP-DQQRLIFAGEQLEDGYYTLADYNIQKESTLHLV 301
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F + LT KTI LEVE SDT +NVKAKIQDKEGIPP
Sbjct: 158 FVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPP 192
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F LTGKTITLEVE SDTI+NVKAKIQDKE I P
Sbjct: 234 FVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQP 268
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +2
Query: 245 GNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 349
G P +QQRLIF+GK L+DGRTL+DY+IQK+S LHL
Sbjct: 37 GIPLDQQRLIFSGKLLDDGRTLADYSIQKDSILHL 71
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
K LT KTIT++V SDTI NVKAKIQD EGIP
Sbjct: 8 KTLTEKTITIDVVSSDTINNVKAKIQDIEGIP 39
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 266
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 51.2 bits (117), Expect = 6e-07
Identities = 18/36 (50%), Positives = 30/36 (83%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINR 266
K LTGK I +++EP+DTI+ +K ++++KEGIPP+ +
Sbjct: 82 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P QQRLI+AGKQL D +T DY I+ S LHLV
Sbjct: 109 KEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLV 146
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 188 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 221
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+D NIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLAD-NIQKESTLHLV 145
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE S TI+NVKAKIQDKEGIPP
Sbjct: 231 FVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPP 265
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKE IPP
Sbjct: 155 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPP 189
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDG 301
+ G P +QQRLIFAGKQLE G
Sbjct: 260 KEGIPPDQQRLIFAGKQLEGG 280
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 64.1 bits (149), Expect = 8e-11
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+N+KAKIQDKEGIPP
Sbjct: 80 FVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPP 114
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G +QQRLIFAGKQ EDGRTL+DYNIQKESTLHLV
Sbjct: 185 KEGISPDQQRLIFAGKQHEDGRTLADYNIQKESTLHLV 222
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +2
Query: 245 GNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
G P +Q RLIFAGKQLEDGRTL+DYN+Q++STLHL+
Sbjct: 35 GIPPDQHRLIFAGKQLEDGRTLADYNVQEDSTLHLL 70
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGI P
Sbjct: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISP 190
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKT LEVE SDTI+NVKAKIQD EGIPP
Sbjct: 4 FLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPP 38
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38
Score = 51.2 bits (117), Expect = 6e-07
Identities = 18/36 (50%), Positives = 30/36 (83%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINR 266
K LTGK I +++EP+DTI+ +K ++++KEGIPP+ +
Sbjct: 82 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P QQRLI+AGKQL D +T DYNI+ S LHLV
Sbjct: 109 KEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 146
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P +QQRLIFAGKQLEDG TL+DYNIQKESTLHLV
Sbjct: 35 KEGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHLV 72
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 260 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 118 QQRLIFAGKQLEDGRTLADYNIQKESTLHLV 148
Score = 58.0 bits (134), Expect = 6e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F + LTGKTITLEV+ SDTI+NVKAKIQDKEGI P
Sbjct: 82 FVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILP 116
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 245 GNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 349
G+P +QQ L+F G QL+DGRTL DYNI+ ESTLHL
Sbjct: 427 GSPPDQQILLFRGGQLQDGRTLGDYNIRNESTLHL 461
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +2
Query: 257 NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
N QRLIF GK+L+DG TL+DY+IQKESTLHLV
Sbjct: 359 NLQRLIFLGKELKDGCTLADYSIQKESTLHLV 390
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
+ K LT KTITL+VE SD+I NVKAKIQ+KEGIP
Sbjct: 6 YAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIP 39
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LTGKTI LEVE SDTI NVK KIQ KEGI P
Sbjct: 555 FIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKP 589
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
K+ T T+TL+VE SDTIENVKAKIQD+EG+ P
Sbjct: 165 KNFTSDTLTLKVESSDTIENVKAKIQDREGLRP 197
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
P + RLIFAGK LE GRTL+ YNIQK STL+LV
Sbjct: 279 PMDLHRLIFAGKPLEGGRTLAHYNIQKGSTLYLV 312
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K LT K I LEVE DTIENVKA +QDKEGI P
Sbjct: 322 FVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQP 356
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G +QQ LIF G+QLEDG TL DY+I K+STL+LV
Sbjct: 584 KEGIKPDQQMLIFFGQQLEDGVTLGDYDIHKKSTLYLV 621
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +3
Query: 168 TGKTITLEVEPSDTIENVKAKIQDKEGIP 254
T KTITLEVE SDTI+NVK KIQ K GIP
Sbjct: 484 TCKTITLEVESSDTIDNVKVKIQHKVGIP 512
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 168 TGKTITLEVEPSDTIENVKAKIQDKEGIP 254
TG+ LEVE SDTI+NVKAK+QDKE IP
Sbjct: 251 TGENFILEVESSDTIDNVKAKLQDKERIP 279
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 257
F K GK ITLEV SDTI++VKAKIQDK G PP
Sbjct: 396 FVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPP 430
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2
Query: 245 GNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLH 346
G P ++QRLIF G+ L RTL DYNIQK ST+H
Sbjct: 510 GIPLDRQRLIFGGRVLVGSRTLLDYNIQKGSTIH 543
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQL--EDGRTLSDYNIQKESTLHL 349
+ G + QRLIF G++L ED RTL+DY I+ STL L
Sbjct: 192 REGLRPDHQRLIFHGEELFTEDNRTLADYGIRNRSTLCL 230
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
++G P +QQRLIF GKQLEDG TL+DYNIQ +S LHL+
Sbjct: 118 KQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLI 155
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
F K LTG+ I LEVE DTIEN+KAKIQDK+GIP
Sbjct: 89 FIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIP 122
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINR 266
K LT K I +E+E +DTIE +K +I++KEGIPP+++
Sbjct: 6 KTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQ 41
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P QR+++ GKQL D T YN+++ S LHLV
Sbjct: 33 KEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLV 70
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 153 FRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
F K LTG+T T EV+ SDTI +KAK ++KEGIP
Sbjct: 53 FIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIP 86
Score = 34.3 bits (75), Expect = 0.078
Identities = 29/87 (33%), Positives = 44/87 (50%)
Frame = +3
Query: 6 ISIKLVVGGNILCKIIVISHD*ITPNN*N*TKTMVYTRGTSVKESEDANFRKDLTGKTIT 185
ISIK V G +I ++ S N T+ +V G +V F + KT
Sbjct: 98 ISIKTVKGKSINLEVADSSDTIDLKINGEPTRQLVLRLGPAVLMRI---FVSTIKEKTFI 154
Query: 186 LEVEPSDTIENVKAKIQDKEGIPPINR 266
LEV+ SDTI+ +K+ I D+ G PP+++
Sbjct: 155 LEVKGSDTIKKLKSMIHDQGG-PPVDQ 180
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTL 343
Q G P +QQ L G +L++ T+SDYNI+ ++ L
Sbjct: 173 QGGPPVDQQDLNHLGTKLKNNATISDYNIKPDANL 207
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
P+NQQRLI+ G+ L+D +TL Y +Q + T+H+V
Sbjct: 54 PANQQRLIYKGRILKDDQTLLSYGLQADHTIHMV 87
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
P+NQQRLI+ G+ L+D +TL Y +Q + T+H+V
Sbjct: 54 PANQQRLIYKGRILKDDQTLLSYGLQADHTVHMV 87
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 239 QRGNPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+ G P QQRLIF G+ L+D LS+Y+++ TLHL+
Sbjct: 56 ETGVPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLI 93
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +2
Query: 248 NPSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
+P Q RL+F G+ L++ + LSDY++++ TL+LV
Sbjct: 47 SPERQPRLLFRGRVLKNDQRLSDYHVEEGHTLYLV 81
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/34 (41%), Positives = 27/34 (79%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
P+ +QR+I+ GKQL+ +L+ Y+I+++++L LV
Sbjct: 132 PALEQRVIYKGKQLQRENSLTYYSIEQDASLQLV 165
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 171 GKTITLEVEPSDTIENVKAKIQDKEGIPPINR 266
GKTI + E DT+E + +I+ K IP + +
Sbjct: 105 GKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQ 136
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 914
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 132 KESEDANFRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPS 311
K+ E+ NFR +T + T+E P D +E K+ +DK+ P ++G L+ VP
Sbjct: 607 KKQEERNFRGTITLEECTIEEIPEDEVEKSKSS-KDKKANGPDSKGPGLV-FKITCKVPY 664
Query: 312 RTTISRRN 335
+T + N
Sbjct: 665 KTVLKAHN 672
>At1g53980.1 68414.m06149 polyubiquitin-related contains similarity
to polyubiquitin GI:166336 from (Aglaothamnion
neglectum)
Length = 91
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 96 TKTMVYTRGTSVKESEDANFRKDLTGKTITLEVEPSDTIENVKAKIQDKEGIPPINR 266
T+ +V G + + F L GKT LEV+ S+ I+ VK I D+ +PP+ +
Sbjct: 33 TRQLVLGLGQGPQGEMMSIFVSTLKGKTFNLEVKGSEIIQQVKNMIHDQ--VPPVKK 87
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 32.7 bits (71), Expect = 0.24
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 266 RLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
++ + GK+LED ++L++ N+Q S +HL+
Sbjct: 542 KMFYMGKELEDEKSLAEQNVQPNSLVHLL 570
>At1g11970.1 68414.m01383 hypothetical protein
Length = 99
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 165 LTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
L+ K I +E++P D IE +K I+++ GIP
Sbjct: 50 LSEKKIDIEIDPMDKIEQIKEGIEEEIGIP 79
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 30.7 bits (66), Expect = 0.96
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 266 RLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
++ + GK+L+D ++L+ N+Q S +HL+
Sbjct: 703 KMFYKGKELDDEKSLAAQNVQPNSLVHLI 731
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 180 ITLEVEPSDTIENVKAKIQDKEGIP 254
ITL+V+ +T+ENVKA ++ + +P
Sbjct: 13 ITLDVDSQETVENVKALLEVESNVP 37
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEG 248
K L G + V PSDTI VK I+D +G
Sbjct: 6 KTLKGSHFEIRVLPSDTIMAVKKNIEDSQG 35
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEG 248
K L G + V PSDTI VK I+D +G
Sbjct: 6 KTLKGSHFEIRVLPSDTIMAVKKNIEDSQG 35
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEG 248
K L G + V PSDTI VK I+D +G
Sbjct: 6 KTLKGSHFEIRVLPSDTIMAVKKNIEDSQG 35
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 99 KTMVYTRGTSVKESEDANFRKDLTGKTITLEVEPSDTIENVKAKIQDK 242
K M+ T+G S+ ED + DLTG+ + E D E K K +K
Sbjct: 283 KLMLDTKGKSIVVIEDIDCSLDLTGQRKKKKEEDEDEEEEEKKKEAEK 330
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 233 SRQRGN--PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
S++RG+ ++Q +++ G++LED ++D +S LHL+
Sbjct: 141 SKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 233 SRQRGN--PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 352
S++RG+ ++Q +++ G++LED ++D +S LHL+
Sbjct: 141 SKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At3g31310.1 68416.m03983 hypothetical protein
Length = 291
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 198 PSDTIENVKAKIQDKEGIPPINRG*SLLESSWKMDVPSRT 317
PS T +K + +E P + RG + +W++D+P T
Sbjct: 3 PSRTFRGMKVTRRHEEPTPFVARGDTTTYMAWELDLPKET 42
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 251 PSNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 349
P ++Q + F GK LED + +++I + LHL
Sbjct: 37 PVSRQTIFFQGKLLEDHLDIFEWDILQNPLLHL 69
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 167 HGQDHHP*GRAVRYHRECES*NSRQRGNPSNQQRLIFAGKQLEDGRTLSD 316
H Q+H+ GR +H ++ NP N GKQ G + D
Sbjct: 462 HNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPD 511
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 167 HGQDHHP*GRAVRYHRECES*NSRQRGNPSNQQRLIFAGKQLEDGRTLSD 316
H Q+H+ GR +H ++ NP N GKQ G + D
Sbjct: 478 HNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPD 527
>At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 173
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 484 PPSAARVHSEQCGAGVFMAVMEDRHYCGKCHSTMVFKDD 600
PP ++ + CG F + C KCH M+F+ +
Sbjct: 11 PPEGPKLCTNNCG---FFGSAATMNMCSKCHKDMLFQQE 46
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 165 LTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
L G + +EVE +DT+ VK KI+ + +P
Sbjct: 8 LGGSSFEIEVERTDTLLVVKQKIEKSQRVP 37
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 159 KDLTGKTITLEVEPSDTIENVKAKIQDKEGIP 254
++L G + LEV+ DT+ VK KI+ + IP
Sbjct: 6 ENLNGSSFELEVDYRDTLLVVKQKIERSQHIP 37
>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
putative similar to SP|O04379 Argonaute protein (AGO1)
{Arabidopsis thaliana}; contains Pfam profiles PF02170:
PAZ domain, PF02171: Piwi domain
Length = 997
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 208 VSDGSTSRVMVLPVRSLRKFASSLSLTLVPRV 113
VS+G S+V++ + ++RK +SL VPRV
Sbjct: 809 VSEGQFSQVLLHEMTAIRKACNSLQENYVPRV 840
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,255
Number of Sequences: 28952
Number of extensions: 274846
Number of successful extensions: 969
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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