Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20564
         (655 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    30   0.056
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    30   0.073
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.22 
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    27   0.68 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   1.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    25   1.6  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   2.1  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   3.7  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   6.4  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   8.4  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    23   8.4  

>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 0.056
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
 Frame = +1

Query: 58  ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLR-- 231
           +NL++  ++    +EQ+ ++R   +EK ++     Q + ++A  R    +A+  EKLR  
Sbjct: 43  QNLEETRKKNESLQEQLTQLRWLMEEKLREQREDAQRREEEARRREEAAKAD-NEKLRVE 101

Query: 232 ---NHNIKLAESARPRPLKSRRSLKTLRTN*P 318
               H   +A SA+ R L+ +  +K  + + P
Sbjct: 102 QQETHTTLIAISAQLRDLQQKNQMKRQQQHQP 133


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 29.9 bits (64), Expect = 0.073
 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +1

Query: 25  DKMTTAADKRDENLKKMIERLREHEEQVRKVRAG---NQEKFQQLESAIQE 168
           +++ +A  K DE L++M  +L + ++ ++K++     N+++ QQL   + E
Sbjct: 726 NELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQLAGVVFE 776


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 88  REHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAESARP 267
           RE E++ ++ R   Q + +Q E   +EK ++    R      +RE+ R   + +   + P
Sbjct: 488 REKEQREKEERERQQREKEQREREQREKEREREAARERERERERERERERMMHMMPHSLP 547

Query: 268 RPLKS 282
           RP  S
Sbjct: 548 RPFFS 552


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 73  MIERLREHEEQVRKVRAGNQEKFQQLESA--IQEKLQQAADRRLLIEAEQREKLR 231
           M E +R+    + +  A N+   ++L     +  K Q+  +RR LI  E+ EK+R
Sbjct: 1   MREAIRQLTNSLAEANARNERINEELTQMRILMTKQQEYTERRELIAREEMEKMR 55


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +3

Query: 294 KDIENKLTTAELNREKEIQKKLDFVKXXERRAELVRQN 407
           KD++ K+   + +RE+E++   + +K  ++++E  R+N
Sbjct: 772 KDLQAKIADGKGHRERELKSAEEDLKRSKKKSEESRKN 809


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 148  LESAIQ-EKLQQAADRRLLIEAEQREKLRNHNIKLAESARPRPLKS 282
            LESA   +++QQAA RR+L   ++  +     +  AE+A+P P  S
Sbjct: 993  LESAEWWDRIQQAA-RRILSVLQEDWREEQQTLAAAEAAQPDPASS 1037


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 519 AHQHQQSDLTR*H*SREKRHYVSIGRR*V*TERDASNVASKS 644
           AHQ QQ    + H      H    G     +E+D+S  +SKS
Sbjct: 148 AHQQQQQQQQQLHHHHHHHHNAPAGGESSTSEKDSSRESSKS 189


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 25   DKMTTAADKRDE---NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAAD 189
            ++M  A +K  E   ++KK I  L++ E + +  R     +F+Q+   I+ KLQ+  D
Sbjct: 973  EEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRL----EFEQILQTIETKLQETKD 1026


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  KAIEDKMTTAADKRDENLKKMIERLRE 93
           K +E +  T  +  D+N KK IER  E
Sbjct: 45  KKLEKRKETLGESLDKNHKKKIERDEE 71


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 270  TAKVEEITKDIENKLTTAELNREKEIQKKLDFVKXXERRAELVRQNKNXRXET 428
            TA+++    +    L    + R+ E   +L+  +   RRA   R+N N R  T
Sbjct: 1067 TAQLQRAWDEERAALAVNVIERQDEDAAELEAQRAEVRRARNERRNANRRAAT 1119


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 4   EVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQE 135
           E Y   ++++   A+  +    K +ER R  E + +K+R  N++
Sbjct: 165 EEYIPTQEELLEEAEITERENIKSLERFRRMELEKQKIRPTNKK 208


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,530
Number of Sequences: 2352
Number of extensions: 6924
Number of successful extensions: 34
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)