Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20564
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.28 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.84 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 82   RLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQRE 222
            R+R  +EQ R      Q++ QQ +   Q++ QQ   ++   +A +RE
Sbjct: 1194 RIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 323 RAEPGKGNTEE-TRFRQXXGATRRAGPAEQEXPXRDRGPALLRLERGPPTHASHA 484
           +A    GN ++  +  +  GAT R  P +      D+  + + L+ GPP HA  A
Sbjct: 204 KASEEHGNKKKKNKEDEDDGATPRKAPPQLSTT--DKKGSAIDLDIGPPLHADQA 256


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +2

Query: 398 PAEQEXPXRDRGPALLRLERGPPTHASHAHVTTVRFDSVTRPPT 529
           P     P    G   +    GPP H  H    +++     +PPT
Sbjct: 328 PHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPT 371


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +1

Query: 46  DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 225
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 226 LRNHNI 243
            + H I
Sbjct: 76  SKEHKI 81


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +1

Query: 46  DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 225
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 226 LRNHNI 243
            + H I
Sbjct: 76  SKEHKI 81


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +1

Query: 46  DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 225
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 226 LRNHNI 243
            + H I
Sbjct: 76  SKEHKI 81


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +1

Query: 4   EVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEK 138
           E+ K+ +D     ADK ++ +   + R+      V   + GN+++
Sbjct: 60  EIEKSEDDSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQRGNEQR 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,647
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)