Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20563
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.1  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   1.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   6.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/76 (23%), Positives = 27/76 (35%)
 Frame = +1

Query: 286 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 465
           ++ N   +P   G+  P S         L P   + + A S  +K  KG      +   L
Sbjct: 130 VISNGYSSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCDSKKKKGPTPRQQEELCL 189

Query: 466 KPGDKVGASEATLLTC 513
             GD+        LTC
Sbjct: 190 VCGDRASGYHYNALTC 205


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 145 HGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHRGD 264
           H K H    + +RP   +   R+ V     +R LRVH G+
Sbjct: 24  HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVHTGE 63


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 145 HGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHRGD 264
           H K H    + +RP   +   R+ V     +R LRVH G+
Sbjct: 177 HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVHTGE 216


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 50   EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 178
            EYPKC+ V  +       +     +R  S     KN ++  A+
Sbjct: 2443 EYPKCWQVDCNKGPDSDKEAFAAFVRELSAAFKPKNLLLSAAV 2485


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 273 LNEVSAVNTKPTLPLMCGNSFSRAGLL 193
           +N +   N KP +  +CG S++R   L
Sbjct: 239 INLLEEDNQKPNVCRICGKSYARPSTL 265


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 641 SNSSLELGTEIFWFDVQNFRCKNS 570
           S++ +E  + ++WF V+   CK S
Sbjct: 389 SDAEIEKLSTVYWFTVEFGLCKES 412


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 115 YLATWLQYRAHGKKHNDAQSHQRP 186
           YL  W+  R   + H D    +RP
Sbjct: 15  YLNIWVPQRLRIRHHGDKPPQERP 38


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 643 LATPAWNLARRSSGLMSRISGAKIVPESYTCLTT 542
           L+TP+ + A +SSGL S +S +   P      TT
Sbjct: 129 LSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTT 162


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 17  NYFVKIIQLLDEYPKCF 67
           N   KI  L+DE+ +CF
Sbjct: 214 NLHNKICNLIDEFNECF 230


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 339 QWGNGTRTSW 310
           Q+GNG  TSW
Sbjct: 274 QFGNGLETSW 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,377
Number of Sequences: 336
Number of extensions: 4193
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)