Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20563
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 111 1e-25
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.41
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.2
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 28 1.6
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.2
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.0
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 8.8
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 8.8
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 8.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 111 bits (267), Expect = 1e-25
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = +1
Query: 262 DLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIE 441
DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIE
Sbjct: 92 DLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIE 151
Query: 442 IINDVHILKPGDKVGASEATLL 507
I +DVH++ KVG SEATLL
Sbjct: 152 ITSDVHLVSKDAKVGPSEATLL 173
Score = 93.5 bits (222), Expect = 3e-20
Identities = 41/82 (50%), Positives = 61/82 (74%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 191 DNNPALEKLLPHIKGNVGFVFT 256
++ P LE+LLP ++GNVGFVFT
Sbjct: 68 NDMPELERLLPVVRGNVGFVFT 89
Score = 82.2 bits (194), Expect = 7e-17
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = +3
Query: 507 HMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 686
+MLNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+SL YPTI
Sbjct: 174 NMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTIL 233
Query: 687 SAPHSIANGFKN 722
S HS+ N +KN
Sbjct: 234 SVMHSVVNAYKN 245
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.41
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 141 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 248
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 446 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 321
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 739 SSDGQKFLKPLAMECGAEAIVG*PIAKERAATLATPAW 626
SSDGQ F KP AI P+ + A + P W
Sbjct: 356 SSDGQYFFKPTVQTVIERAIAAAPLGEMTWARMDYPKW 393
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 207 RAGLLSRWSLMALRIIVFFPMSTILEPR 124
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 453 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 331
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 5.0
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = +1
Query: 178 QRPPGQQSSPRETVATHQGQRWLR-VHRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVI 351
++P G Q +E++ + Q + VEV+ K +++ V AP A+ + P+S
Sbjct: 779 KQPSGGQQLRQESLPSQQSSESKQSTQHQQPVEVQ-KSIQSDVSAPKAKEVSEKPVSHQA 837
Query: 352 PAHNTGLGPEKTSFFQA------LSIPTKISKGTIEIINDVHILKPGDKVGAS 492
N T QA SIP S + ++ ND H+ DK S
Sbjct: 838 KPSNASQLSRNTDDTQAKEAPKEASIPDNASTASTKVSNDSHLKPDADKKSVS 890
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 59 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 205
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 453 IVDDFNSTL*NLGRDRKSL 397
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 261 SAVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 160
S+ + PTLP + + S +G+LSR + + ++ I
Sbjct: 43 SSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,881
Number of Sequences: 5004
Number of extensions: 68776
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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