Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20563
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 111 8e-25
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 111 8e-25
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 111 8e-25
06_01_0080 + 644021-645463 33 0.32
03_02_0966 + 12783515-12783901 32 0.43
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 4.0
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 5.2
04_04_1404 + 33302080-33303341,33303435-33305307 28 6.9
10_08_0406 - 17688069-17690643,17691065-17691132 28 9.2
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 9.2
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 111 bits (266), Expect = 8e-25
Identities = 51/84 (60%), Positives = 67/84 (79%)
Frame = +1
Query: 256 RGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 435
+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT
Sbjct: 95 KGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154
Query: 436 IEIINDVHILKPGDKVGASEATLL 507
+EII V ++K GDKVG+SE+ LL
Sbjct: 155 VEIITPVELIKKGDKVGSSESALL 178
Score = 100 bits (240), Expect = 1e-21
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +3
Query: 513 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 692
L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+A
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 693 PHSIANGFKN 722
PH NG+KN
Sbjct: 241 PHMFLNGYKN 250
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H
Sbjct: 11 KVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHA 70
Query: 191 DN--NPALEKLLPHIKGNVGFVFT 256
DN N +L+P + GNVG +FT
Sbjct: 71 DNTGNKDFLELMPLLVGNVGLIFT 94
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 111 bits (266), Expect = 8e-25
Identities = 51/84 (60%), Positives = 67/84 (79%)
Frame = +1
Query: 256 RGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 435
+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT
Sbjct: 95 KGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154
Query: 436 IEIINDVHILKPGDKVGASEATLL 507
+EII V ++K GDKVG+SE+ LL
Sbjct: 155 VEIITPVELIKKGDKVGSSESALL 178
Score = 100 bits (240), Expect = 1e-21
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +3
Query: 513 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 692
L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+A
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 693 PHSIANGFKN 722
PH NG+KN
Sbjct: 241 PHMFLNGYKN 250
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H
Sbjct: 11 KVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHA 70
Query: 191 DN--NPALEKLLPHIKGNVGFVFT 256
DN N +L+P + GNVG +FT
Sbjct: 71 DNTGNKDFLELMPLLVGNVGLIFT 94
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 111 bits (266), Expect = 8e-25
Identities = 51/84 (60%), Positives = 67/84 (79%)
Frame = +1
Query: 256 RGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 435
+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT
Sbjct: 95 KGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT 154
Query: 436 IEIINDVHILKPGDKVGASEATLL 507
+EII V ++K GDKVG+SE+ LL
Sbjct: 155 VEIITPVELIKKGDKVGSSESALL 178
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +3
Query: 513 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 692
L I PFSYGLV+ VYDSG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+A
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 693 PHSIANGFKN 722
PH NG+KN
Sbjct: 241 PHMFLNGYKN 250
Score = 93.5 bits (222), Expect = 2e-19
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H
Sbjct: 11 KVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHA 70
Query: 191 DN--NPALEKLLPHIKGNVGFVFT 256
DN N +L+P + GNVG +FT
Sbjct: 71 DNTGNKEFLELMPLLVGNVGLIFT 94
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 453 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 346
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>03_02_0966 + 12783515-12783901
Length = 128
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 630 AGVANVAALSLAIGYPTIASAPHSIANGFKNFWPSLLS 743
AG+A VAA++ A+ P +A A +++ KNF S+ S
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 603 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 719
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 256 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 161
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 169 QSHQRPPGQQSSPRETVATHQGQRWLRVHRGDLVEVRDKLLENKVQAPARPGAIAPL 339
Q R + + P + + THQG RW + V+ L + V+A P I PL
Sbjct: 230 QRRARCAWEYTGPEDYMRTHQGARWDWAPEDFKIVVQRVLNLSSVEASRIPQVILPL 286
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 31 DHPTLGRVPKMFHRGCR*RGLATDAA-DPYLATWLQYRAHGKKHNDAQSHQR 183
D P R ++FHR R RG A D A D W+ + ND Q H +
Sbjct: 789 DDPAARRGARLFHR-LRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAK 839
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 461 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 339
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,586,414
Number of Sequences: 37544
Number of extensions: 501857
Number of successful extensions: 1478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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