Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20563
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        125   4e-29
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        34   0.14 
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_32864| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 29   4.1  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   5.4  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.1  
SB_26522| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)             28   7.1  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   9.4  
SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_29976| Best HMM Match : PT (HMM E-Value=5.9)                        28   9.4  
SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)                     28   9.4  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  125 bits (301), Expect = 4e-29
 Identities = 58/75 (77%), Positives = 64/75 (85%)
 Frame = +2

Query: 38  QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 217
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 218 LPHIKGNVGFVFTAE 262
           LPHIKGN+GFVFT E
Sbjct: 61  LPHIKGNIGFVFTKE 75



 Score =  112 bits (270), Expect = 3e-25
 Identities = 51/76 (67%), Positives = 64/76 (84%)
 Frame = +1

Query: 262 DLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIE 441
           DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIE
Sbjct: 76  DLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIE 135

Query: 442 IINDVHILKPGDKVGA 489
           IINDVH++K  +K+ A
Sbjct: 136 IINDVHLIKKDEKLKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -1

Query: 453 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 331
           I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 152 KNTMMRKAIKDHLDNNPALEKLLPHIKGNV 241
           K T++RK +K HLDN P L K LP + G +
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGL 196


>SB_32864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +3

Query: 498 HPSHMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYP 677
           +P+ + NI P +Y L      D   I+  ++ +I P DL   +   ++++    L   YP
Sbjct: 70  YPTDLSNIYPQTY-LSANYPTDLSDIYPTDLSNIYPTDLSDIYPTDLSSIYPTDLCGIYP 128

Query: 678 TIASAPHSIANGFKNFWPSLLS 743
           T  SA +    G  + +P+ LS
Sbjct: 129 TDLSADY--PTGLSDIYPTDLS 148


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 292  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 465
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 466  KPGDK 480
             PG K
Sbjct: 2129 TPGKK 2133


>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1521

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/63 (39%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = -3

Query: 400 PGRKRSSLDRGRCCGRE*RLTMGQWHQ-DELELGLCSP----TVCHGPQRGLRGEHEANV 236
           PG     L   R  GR+ R   GQ    D L L LCSP      CHGP R L      NV
Sbjct: 481 PGHGGERLAERRHNGRD-RRRYGQPDSGDALGLVLCSPGDRVNHCHGPHRQLEATQLCNV 539

Query: 235 ALD 227
             D
Sbjct: 540 LSD 542


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/97 (19%), Positives = 40/97 (41%)
 Frame = +2

Query: 38  QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 217
           Q L+   +   +  + + +Q+M  + +  R  S    G+N+++ +     +D   +L   
Sbjct: 672 QTLETAQRALAINRNCIEAQRMVILFMLCRDGSYTECGRNSLVLQQTVTLIDRAQSLAPA 731

Query: 218 LPHIKGNVGFVFTAETSLRSVTNCWRTKSKLQLVLVP 328
               +  +GF    +  +R  T  +R   KL    VP
Sbjct: 732 DAEYQIELGFQHVLQGKIRDATKAFRAAMKLDETSVP 768


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 485  PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 369
            P   P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 52   VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 156
            VPKMFH     RG+ T+A  P + T +L+ R  G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891


>SB_26522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 182 DHLDNNPALEKLLPHIKGNVGFVFTAETSLRSVTNCWRT-KSKLQLVLVPLPHCQSSFPP 358
           D  DN+ +  K LP +  +   + +A   +  V + W+T   +LQL ++      SSFP 
Sbjct: 50  DDFDNSSSPPKALPTLVDSCCKILSANFPIGYVQDQWKTVPDELQLKVI-----SSSFPA 104

Query: 359 TTPASV 376
             PA+V
Sbjct: 105 EFPATV 110


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 516 STCEKGGFRSSNLVTGL-QDVYIVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVG 355
           +TC  G F      TG  +++Y+V  FN+    +   +KSL    ++W + G +G
Sbjct: 480 TTCTTGDFCFMTRTTGFGKNLYLVQKFNNNRSIMVERKKSLLLTYIIWFKLGWLG 534


>SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)
          Length = 598

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/68 (22%), Positives = 29/68 (42%)
 Frame = -2

Query: 686 SNSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHV 507
           S SW    +R  +Y   S+++    +FW   +     +   ++Y+  N  + E++   H 
Sbjct: 425 SKSWTPELERALNYDRKSAIQFDNGVFWIAWETL--LHFFDVVYMNWNPRLFEYKFTYHS 482

Query: 506 RRVASEAP 483
              A E P
Sbjct: 483 TWAAQEGP 490


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 523 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 615
           L S +++++ RY+ +   LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -2

Query: 494 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 345
           S  P L P      S    I+P EILVG+ER  +K V  G    L   MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305


>SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 235 QRWLRVHRGDLVEVRDKLLE 294
           +RW R   GDLVE  DKLL+
Sbjct: 87  ERWFRDPIGDLVEYEDKLLK 106


>SB_29976| Best HMM Match : PT (HMM E-Value=5.9)
          Length = 342

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 27/91 (29%), Positives = 39/91 (42%)
 Frame = +1

Query: 109 DPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHRGDLVEVRDKL 288
           DP   +  Q    GK  +DA +  RPP QQ +P   V   +G        G L    D+ 
Sbjct: 44  DPTGFSEAQLSVIGKTVSDALASWRPP-QQDTPSPPVVASEGTPGSASPLG-LDRPLDEA 101

Query: 289 LENKVQAPARPGAIAPLSVVIPAHNTGLGPE 381
           LE K+      G    L++++P +    GPE
Sbjct: 102 LEGKITR----GEHIDLALLLPDNLAHAGPE 128


>SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)
          Length = 332

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 27/91 (29%), Positives = 39/91 (42%)
 Frame = +1

Query: 109 DPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHRGDLVEVRDKL 288
           DP   +  Q    GK  +DA +  RPP QQ +P   V   +G        G L    D+ 
Sbjct: 130 DPTGFSEAQLSVIGKTVSDALASWRPP-QQDTPSPPVVASEGTPGSASPLG-LDRPLDEA 187

Query: 289 LENKVQAPARPGAIAPLSVVIPAHNTGLGPE 381
           LE K+      G    L++++P +    GPE
Sbjct: 188 LEGKITR----GEHIDLALLLPDNLAHAGPE 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,213,309
Number of Sequences: 59808
Number of extensions: 550762
Number of successful extensions: 1624
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)