Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20563
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 135 4e-32
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z66566-1|CAA91484.1| 515|Caenorhabditis elegans Hypothetical pr... 30 1.5
X60232-1|CAA42792.1| 515|Caenorhabditis elegans LIN-14B2 protein. 30 1.5
X60231-1|CAA42791.1| 539|Caenorhabditis elegans LIN-14B1 protein. 30 1.5
Z81070-12|CAB03008.1| 495|Caenorhabditis elegans Hypothetical p... 30 2.0
Z75544-6|CAA99882.1| 495|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF174643-1|AAD51977.1| 495|Caenorhabditis elegans PP2A-B regula... 30 2.0
Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical p... 29 3.5
Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical pr... 29 3.5
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 28 8.2
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 28 8.2
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 135 bits (326), Expect = 4e-32
Identities = 57/87 (65%), Positives = 74/87 (85%)
Frame = +2
Query: 2 ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 181
+TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM+RKA++
Sbjct: 7 STWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALR 66
Query: 182 DHLDNNPALEKLLPHIKGNVGFVFTAE 262
HL NP+LEKLLPHI NVGFVFT E
Sbjct: 67 GHLGKNPSLEKLLPHIVENVGFVFTKE 93
Score = 126 bits (303), Expect = 2e-29
Identities = 58/82 (70%), Positives = 69/82 (84%)
Frame = +1
Query: 262 DLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIE 441
DL E+R KLLEN+ APA+ GAIAP V +P NTG+GPEKTSFFQAL IPTKI++GTIE
Sbjct: 94 DLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIE 153
Query: 442 IINDVHILKPGDKVGASEATLL 507
I+NDVH++K GDKVGASE+ LL
Sbjct: 154 ILNDVHLIKEGDKVGASESALL 175
Score = 103 bits (247), Expect = 1e-22
Identities = 43/72 (59%), Positives = 60/72 (83%)
Frame = +3
Query: 507 HMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 686
+ML ++PFSYGLVV+QVYD GT++ PE+LD+ E+LR +F +GV NVA++SLA+ YPT+A
Sbjct: 176 NMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLA 235
Query: 687 SAPHSIANGFKN 722
S HS+ANG +N
Sbjct: 236 SVAHSLANGLQN 247
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K+N ++ +D+Y FI N+ S + IR + +S GKN ++ A+
Sbjct: 23 KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQK 82
Query: 191 DNNPA--LEKLLPHIKGNVGFVFT 256
+ A L K +KG G +FT
Sbjct: 83 SDEYANQLHKASAILKGQCGLMFT 106
>Z66566-1|CAA91484.1| 515|Caenorhabditis elegans Hypothetical
protein T25C12.1a protein.
Length = 515
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = -1
Query: 339 QWGNGTRTSWSLD-----FVLQQFVTDLNEVSAVN-TKPTLPL--MCGNSFSRAGLLSRW 184
+WGNGT ++ S+ L++ VTDL + AVN P LPL GN F+ GL ++
Sbjct: 19 EWGNGTESTQSVAACQGCIELRKEVTDLRQ--AVNLILPMLPLYPTIGNGFNATGLAAQP 76
Query: 183 SL 178
+L
Sbjct: 77 TL 78
>X60232-1|CAA42792.1| 515|Caenorhabditis elegans LIN-14B2 protein.
Length = 515
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = -1
Query: 339 QWGNGTRTSWSLD-----FVLQQFVTDLNEVSAVN-TKPTLPL--MCGNSFSRAGLLSRW 184
+WGNGT ++ S+ L++ VTDL + AVN P LPL GN F+ GL ++
Sbjct: 19 EWGNGTESTQSVAACQGCIELRKEVTDLRQ--AVNLILPMLPLYPTIGNGFNATGLAAQP 76
Query: 183 SL 178
+L
Sbjct: 77 TL 78
>X60231-1|CAA42791.1| 539|Caenorhabditis elegans LIN-14B1 protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = -1
Query: 339 QWGNGTRTSWSLD-----FVLQQFVTDLNEVSAVN-TKPTLPL--MCGNSFSRAGLLSRW 184
+WGNGT ++ S+ L++ VTDL + AVN P LPL GN F+ GL ++
Sbjct: 43 EWGNGTESTQSVAACQGCIELRKEVTDLRQ--AVNLILPMLPLYPTIGNGFNATGLAAQP 100
Query: 183 SL 178
+L
Sbjct: 101 TL 102
>Z81070-12|CAB03008.1| 495|Caenorhabditis elegans Hypothetical
protein F26E4.1 protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -2
Query: 683 NSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVR 504
N + T + + SLE+ +I ++ + KN++ I N+KTI W+ + R
Sbjct: 111 NVYSTFQSHEPEFDYLKSLEIDEKIN--QIRWLKKKNAANFILSTNDKTIKLWKISERER 168
Query: 503 RVASEAPTLSPGFKMCTS-----LMI-SIVPFEILV 414
++ +A L ++ TS L I SIVP E++V
Sbjct: 169 KIGDDAWNLPRTNRINTSSFRGRLQIPSIVPMELIV 204
>Z75544-6|CAA99882.1| 495|Caenorhabditis elegans Hypothetical
protein F26E4.1 protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -2
Query: 683 NSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVR 504
N + T + + SLE+ +I ++ + KN++ I N+KTI W+ + R
Sbjct: 111 NVYSTFQSHEPEFDYLKSLEIDEKIN--QIRWLKKKNAANFILSTNDKTIKLWKISERER 168
Query: 503 RVASEAPTLSPGFKMCTS-----LMI-SIVPFEILV 414
++ +A L ++ TS L I SIVP E++V
Sbjct: 169 KIGDDAWNLPRTNRINTSSFRGRLQIPSIVPMELIV 204
>AF174643-1|AAD51977.1| 495|Caenorhabditis elegans PP2A-B
regulatory subunit PR55/B protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -2
Query: 683 NSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVR 504
N + T + + SLE+ +I ++ + KN++ I N+KTI W+ + R
Sbjct: 111 NVYSTFQSHEPEFDYLKSLEIDEKIN--QIRWLKKKNAANFILSTNDKTIKLWKISERER 168
Query: 503 RVASEAPTLSPGFKMCTS-----LMI-SIVPFEILV 414
++ +A L ++ TS L I SIVP E++V
Sbjct: 169 KIGDDAWNLPRTNRINTSSFRGRLQIPSIVPMELIV 204
>Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 199 SSPRETVATHQGQRWLRVHRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP 378
SS ++T+ +RVHRG++ KV+ P++ A+A ++VI G GP
Sbjct: 338 SSTKDTLRRLSPGYCIRVHRGEVSASAPASERTKVRRPSKDPALAQQNLVISV-GKGWGP 396
Query: 379 EKTSFF 396
+ +
Sbjct: 397 NYSRLY 402
>Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 199 SSPRETVATHQGQRWLRVHRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP 378
SS ++T+ +RVHRG++ KV+ P++ A+A ++VI G GP
Sbjct: 338 SSTKDTLRRLSPGYCIRVHRGEVSASAPASERTKVRRPSKDPALAQQNLVISV-GKGWGP 396
Query: 379 EKTSFF 396
+ +
Sbjct: 397 NYSRLY 402
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/96 (23%), Positives = 35/96 (36%)
Frame = +1
Query: 109 DPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHRGDLVEVRDKL 288
DP + L+Y G++ N ++ Q +PR V W R R R K
Sbjct: 44 DPSKSATLKYLKEGERENFGENFFEKVAQAEAPR--VPYQSEPNWARTAREKSERARSKT 101
Query: 289 LENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 396
+ A + AP + + A N EK+ F
Sbjct: 102 PADPHTAYRPASSPAPANHPVHAENAREHAEKSKVF 137
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/96 (23%), Positives = 35/96 (36%)
Frame = +1
Query: 109 DPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHRGDLVEVRDKL 288
DP + L+Y G++ N ++ Q +PR V W R R R K
Sbjct: 163 DPSKSATLKYLKEGERENFGENFFEKVAQAEAPR--VPYQSEPNWARTAREKSERARSKT 220
Query: 289 LENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 396
+ A + AP + + A N EK+ F
Sbjct: 221 PADPHTAYRPASSPAPANHPVHAENAREHAEKSKVF 256
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 286 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 435
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,514
Number of Sequences: 27780
Number of extensions: 394450
Number of successful extensions: 1249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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