Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20563
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 108 3e-24
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 108 3e-24
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 108 3e-24
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 30 1.9
At5g13260.1 68418.m01523 expressed protein 28 5.8
At1g33410.1 68414.m04136 expressed protein 28 5.8
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri... 28 7.7
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 108 bits (260), Expect = 3e-24
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = +1
Query: 229 QGQRWLRVHRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALS 408
QG L +GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+
Sbjct: 85 QGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLN 144
Query: 409 IPTKISKGTIEIINDVHILKPGDKVGASEATLL 507
IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 145 IPTKINKGTVEIITPVELIKQGDKVGSSEAALL 177
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H
Sbjct: 10 KIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHS 69
Query: 191 DN--NPALEKLLPHIKGNVGFVFT 256
+N N A+ LLP ++GNVG +FT
Sbjct: 70 ENSGNTAILNLLPLLQGNVGLIFT 93
Score = 90.6 bits (215), Expect = 1e-18
Identities = 37/70 (52%), Positives = 54/70 (77%)
Frame = +3
Query: 513 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 692
L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+A
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAA 239
Query: 693 PHSIANGFKN 722
PH N +KN
Sbjct: 240 PHMFINAYKN 249
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 108 bits (260), Expect = 3e-24
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = +1
Query: 229 QGQRWLRVHRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALS 408
QG L +GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+
Sbjct: 85 QGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLN 144
Query: 409 IPTKISKGTIEIINDVHILKPGDKVGASEATLL 507
IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 145 IPTKINKGTVEIITPVELIKQGDKVGSSEAALL 177
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 190
K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H
Sbjct: 10 KIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHS 69
Query: 191 DN--NPALEKLLPHIKGNVGFVFT 256
+N N A+ LLP ++GNVG +FT
Sbjct: 70 ENTGNTAILNLLPLLQGNVGLIFT 93
Score = 90.6 bits (215), Expect = 1e-18
Identities = 37/70 (52%), Positives = 54/70 (77%)
Frame = +3
Query: 513 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 692
L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+A
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAA 239
Query: 693 PHSIANGFKN 722
PH N +KN
Sbjct: 240 PHMFINAYKN 249
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 108 bits (260), Expect = 3e-24
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = +1
Query: 229 QGQRWLRVHRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALS 408
QG L +GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+
Sbjct: 86 QGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLN 145
Query: 409 IPTKISKGTIEIINDVHILKPGDKVGASEATLL 507
IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 146 IPTKINKGTVEIITPVELIKKGDKVGSSEAALL 178
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +3
Query: 513 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 692
L I PFSYGLVV+ VYD+G++F PE+L++ +DL KF AGV+ + ALSLAI YPT+A+A
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240
Query: 693 PHSIANGFKN 722
PH N +KN
Sbjct: 241 PHMFLNAYKN 250
Score = 91.9 bits (218), Expect = 4e-19
Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Frame = +2
Query: 20 YFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLD-- 193
Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D
Sbjct: 14 YDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKT 73
Query: 194 NNPALEKLLPHIKGNVGFVFT 256
N A LLP ++GNVG +FT
Sbjct: 74 GNQAFLSLLPLLQGNVGLIFT 94
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 379 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 507
E + L +P +++KGT+E++ D + + G ++ A +L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHIL 191
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 143 ARYWSHVARYGSAASVASPRYRH 75
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 93 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 221
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
Length = 220
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +2
Query: 95 QQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTAETSLR 274
+Q Q +R +L ++ +++ KNT++ KAI+ E L P +KG ++F +
Sbjct: 76 KQFQDLRRTLPDTTKLIVAKNTLVFKAIE-----GTKWEALKPCMKGMNAWLFVQTDEIP 130
Query: 275 SVTNCWRTKSK 307
S +R+ K
Sbjct: 131 SAIKPYRSFQK 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,711,802
Number of Sequences: 28952
Number of extensions: 385780
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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