Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20562
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    77   3e-15
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    57   3e-09
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    40   2e-04
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    29   0.58 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   1.8  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   1.8  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   4.1  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.4  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    26   5.4  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    26   5.4  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   7.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   7.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   9.5  

>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
 Frame = +3

Query: 249 EALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMR--GCIM 422
           +A+R GEKG+V  AGDISP++++ H+P +CE+ +V Y YT S++ +G A  T R   C+M
Sbjct: 63  KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVM 122

Query: 423 VL-------VKEHEDYKDLYEEVKSEIKLL 491
           ++       + + E+YK+ YEE+  E+  L
Sbjct: 123 IVPGGKKKDMSKVEEYKESYEEIIKEVPAL 152


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 30/88 (34%), Positives = 47/88 (53%)
 Frame = +3

Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
           +K     ++ L  G    +  A D  PIEI+ HLP +CE+K+V Y + PS+  +G A G 
Sbjct: 33  RKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGV 92

Query: 405 MRGCIMVLVKEHEDYKDLYEEVKSEIKL 488
            R  I   +  +E   DL  ++++ IKL
Sbjct: 93  SRPVISASITTNE-ASDLLPQIQA-IKL 118


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKD 455
           +V  A D+ PIE++  LPA+C++  V Y    ++  +G  +      ++ + +  E+ K+
Sbjct: 150 LVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKN 209

Query: 456 LYEEVKSEI 482
               + S +
Sbjct: 210 ELASIVSAV 218


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 226 RNGLKIVQKHYVWVKRAWFSLLETFHP*KSCVTYLRFARRRTSNTVTLQVGR 381
           R G+++   HY  +++   SL E FHP +  + Y R  R   S  V  +  +
Sbjct: 84  RFGVRVENLHYQVLEKDVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQ 135


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 219  LYQKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAM 398
            L Q+   N  EALRL EK     A   SPIE    L  + E    +     ++  I  A+
Sbjct: 1271 LRQRNLGNYMEALRLFEKVTSMGASVFSPIEFPFVLELIGEFYYGRGHKFLAKSYITRAL 1330

Query: 399  GTMR--GCIMVLVKEHEDYKDLYEEVKS 476
              ++  GC  V  K    Y DL  +V+S
Sbjct: 1331 SCLKNIGCYGVENKLRSRYSDLISDVES 1358


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 228 KRPENRSEALRLGEKGMVFFAGDI-SPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
           KRP+  S+ + L    MVFF     +P+EI   LP    +    +       + G   G+
Sbjct: 111 KRPKEESQQIYLLRPAMVFFLAQAPNPLEIESALPPAMFDASFIFLPINDTNECGIESGS 170

Query: 405 MRGCIMVLVKE 437
               ++V V++
Sbjct: 171 HWSLLVVSVEK 181


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 300 SPIEIMCHLPAVCEEKDVQYCYTPSRKD---IGAAMGTMRGCIMVLVKE 437
           SPI++  HL    E   V Y +   RKD   I  +  T++G +M+ +K+
Sbjct: 7   SPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRLKD 55


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 161 VAIGFAIILQCSTFSSWLCGSALMLTSAWSSCSTGSCFTLPI 36
           V + FA I      +  LCG +  ++S     +   CF LP+
Sbjct: 133 VFLVFAYITNILVMAMLLCGGSATISSVTGMNTVAVCFLLPV 174


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 170 SFFVAIGFAIILQC-STFSSWLCGSALMLTSAWSSCSTGSCFTLPIISN 27
           +    +  A +L+   + SSWL   A+ L S W  C    C+ LP + N
Sbjct: 143 AILAVVDLATVLEILESLSSWLEKDAIDLQSQWIFC---FCYKLPELLN 188


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 170 SFFVAIGFAIILQC-STFSSWLCGSALMLTSAWSSCSTGSCFTLPIISN 27
           +    +  A +L+   + SSWL   A+ L S W  C    C+ LP + N
Sbjct: 143 AILAVVDLATVLEILESLSSWLEKDAIDLQSQWIFC---FCYKLPELLN 188


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 369 PSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEE 467
           PS+KD+    GT+R  I+VLV + +D++ L +E
Sbjct: 47  PSQKDLFILNGTVRPGIIVLVND-QDWELLEKE 78


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 243 DFQAVSDIVLMVTRFLNKFI 184
           +FQ + D+V +VTR LNK I
Sbjct: 461 NFQKLHDVVKVVTRNLNKII 480


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 479 NKIARSSIVNYE*DSYLVLKLNSKTFKLINSYILVIKSALN 601
           N I   S+++ +    L  KL S ++ L+NS+ L++KS  N
Sbjct: 14  NGIFPVSLLSTQARQLLNFKLKSPSYYLLNSFKLLVKSEGN 54


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 RWPQKNSPKRYINLLRNRVTIRTI 223
           R+P  N+PK+ IN L++  T+  I
Sbjct: 621 RYPLSNTPKKSINYLQSLQTLEQI 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,547
Number of Sequences: 5004
Number of extensions: 54258
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)