Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20562
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 71 8e-13
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 71 1e-12
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 52 3e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 52 3e-07
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 41 7e-04
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 41 0.001
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 33 0.20
09_04_0144 + 15071723-15071993,15072078-15072632,15072671-150726... 30 1.4
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 30 1.4
11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 29 3.2
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586... 29 3.2
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 5.6
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 28 5.6
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 7.4
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 7.4
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 9.8
07_01_0443 - 3351490-3351513,3351568-3351591,3353339-3354142 27 9.8
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/79 (39%), Positives = 51/79 (64%)
Frame = +3
Query: 249 EALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 428
+++R G+KG+ AG+ISPI+++ H+P +CEE ++ Y Y PS++D+ A T R VL
Sbjct: 54 KSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVL 113
Query: 429 VKEHEDYKDLYEEVKSEIK 485
V +L E+VK ++K
Sbjct: 114 VLTKPAKGELEEDVKEKLK 132
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/79 (39%), Positives = 50/79 (63%)
Frame = +3
Query: 249 EALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 428
+++R G KG+ AG+ISPI+++ H+P +CEE ++ Y Y PS++D+ A T R VL
Sbjct: 54 KSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVL 113
Query: 429 VKEHEDYKDLYEEVKSEIK 485
V ++ EEVK ++K
Sbjct: 114 VMTKPAKGEINEEVKEKLK 132
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
+K ++ L G V A D P+EI+ HLP + E+K+V Y + PS++ +G A G
Sbjct: 34 KKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV 93
Query: 405 MRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 491
R I V +E + +D +K I+ L
Sbjct: 94 TRPVIACSVTSNEASNLRDPINNLKVAIEKL 124
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +3
Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
+K ++ L G V A D P+EI+ HLP + E+K+V Y + PS++ +G A G
Sbjct: 36 KKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV 95
Query: 405 MRGCIMVLVKEHE 443
R I V +E
Sbjct: 96 TRPVIACSVTSNE 108
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKD 455
+V A D+ PIE++ LPA+C + +V YC + +G+ + ++ L + K
Sbjct: 146 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKL 205
Query: 456 LYEEVKSEIK 485
+ ++ IK
Sbjct: 206 EFSKILEAIK 215
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL--VKEHE-- 443
+V A D+ PIE++ LPA+C + ++ YC + +G+ + ++ L VK +
Sbjct: 131 LVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKL 190
Query: 444 DYKDLYEEVKS 476
++ + E +KS
Sbjct: 191 EFSKILEAIKS 201
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 381 DIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLGH 497
++G+A+G +R LVKE+ D K E++KS+I+ L H
Sbjct: 113 ELGSAVGRLRDKEEHLVKEYRDLKLEIEQIKSDIQSLRH 151
>09_04_0144 +
15071723-15071993,15072078-15072632,15072671-15072681,
15072954-15073012,15073962-15074040
Length = 324
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 222 IVLMVTRFLNKFIYLFGEFFCGHRFRYY 139
IVL+VT L + Y+F EF C F YY
Sbjct: 280 IVLLVTLMLANWQYMFKEFTCKQYFCYY 307
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPS 374
+V A D+ PIE++ LPA+C + ++ + T S
Sbjct: 130 LVVIAHDVDPIELVVWLPALCRKMEIVHKKTAS 162
>11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836
Length = 661
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 324 GDT*FLWVKCLQQRKPCPFHPDVMLLNDFQAVSDI--VLMVTRFLNKFIYLFGEFFC 160
GD L + L++ P H D +L F A S++ VL TR + + ++ G F C
Sbjct: 243 GDDGLLDLAALRRALRAPEHADRPMLGSFSACSNVTGVLTDTRAVARLLHQHGAFAC 299
>01_07_0067 -
40857544-40858164,40858265-40858370,40858541-40858659,
40859195-40859392,40859659-40859724,40859798-40859916,
40860295-40860580
Length = 504
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 77 WSSCSTGSCFTLPIISNFY 21
W+ C++ CFT PI+S F+
Sbjct: 188 WTLCASDRCFTNPILSTFF 206
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 134 QCSTFSSWLCGSALMLTSAWSSCSTGSC 51
+C WLCG+A L W+S SC
Sbjct: 381 KCGQCLCWLCGAATGLAHNWTSIDGHSC 408
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 131 CSTFSSWLCGSALMLTSAWSSCSTGSC 51
C WLCG A WSS S SC
Sbjct: 348 CGQAFCWLCGGATGRDHTWSSISGHSC 374
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 431 NKYHDASSHCTHGGTDILPTWSVT 360
+ YH + CTHGG + P+ +VT
Sbjct: 130 SSYHKSCFRCTHGGCTLSPSNNVT 153
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 AVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEH 440
A C+ VQ+CY P R+ + A M + +L K H
Sbjct: 446 ATCKRGFVQFCYEPIREIMNACMNSKHKLWPMLEKIH 482
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 173 VSFFVAIGFAIILQCSTFSSWLCG-SALMLTSAWSSCSTGSCFTLPIIS 30
VSF + +G + L+ + S+WL G A+ + W++ LP+++
Sbjct: 680 VSFSIYVGRRMELELAPVSAWLGGLDAVAWSGLWTAPRPSDAAVLPVVT 728
>07_01_0443 - 3351490-3351513,3351568-3351591,3353339-3354142
Length = 283
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 249 EALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYC 362
EA GE+G V A + ++ AVC+EK++ YC
Sbjct: 242 EAAVAGERGAVAVAAERPRFSVL----AVCKEKEMSYC 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,265
Number of Sequences: 37544
Number of extensions: 319638
Number of successful extensions: 773
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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