Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20562
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          60   2e-09
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        51   7e-07
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        39   0.004
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004

>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +3

Query: 249 EALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSR 377
           +ALR GEKG V  AGD+SPI+++ H+P +CE+  + Y Y PS+
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +3

Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
           +K     ++ L  G    +  A D  P+EI+ HLP +CE+K+V Y +  S+  +G A G 
Sbjct: 95  RKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGV 154

Query: 405 MRGCI--MVLVKEHEDYKDLYEEVKSEIKLL 491
            R  I   V V E    K   + +++ I+ L
Sbjct: 155 TRPVIACAVTVNEGSQLKPQIQTLQNAIEKL 185


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKD 455
           +V  A D+ PIEI+  LPA+C +  V YC    +  +G  +       + +    ++ K+
Sbjct: 63  LVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKN 122

Query: 456 LYEEVKSEIK 485
               +   +K
Sbjct: 123 SLNNLIESVK 132


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKD 455
           +V  A D+ PIEI+  LPA+C +  V YC    +  +G  +       + +    ++ K+
Sbjct: 154 LVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKN 213

Query: 456 LYEEVKSEIK 485
               +   +K
Sbjct: 214 SLNNLIESVK 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,949,656
Number of Sequences: 59808
Number of extensions: 396013
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)