Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20562
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 86 2e-17
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 40 0.002
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 40 0.002
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 31 0.94
AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical ... 29 3.8
Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 28 5.0
Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical pr... 27 8.7
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 8.7
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 8.7
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 8.7
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 8.7
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 8.7
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 27 8.7
AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 27 8.7
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 27 8.7
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 86.2 bits (204), Expect = 2e-17
Identities = 35/79 (44%), Positives = 54/79 (68%)
Frame = +3
Query: 255 LRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVK 434
LR EKG+ AG++SPI++ H+P +CEEK++ Y Y PSR+ +G A+G R I++ VK
Sbjct: 80 LRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVK 139
Query: 435 EHEDYKDLYEEVKSEIKLL 491
D+K+LY+EV ++ L
Sbjct: 140 PSGDFKELYDEVAEALRHL 158
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
+K ++ L G ++ A D P+EI+ HLP +CE+K+V Y + S+ +G A G
Sbjct: 36 KKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGV 95
Query: 405 MRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 491
R I + ++E K +++K +++ L
Sbjct: 96 TRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYK 452
+V A D++P+EI+ HLPA+C + +V Y + +G + + LV + + K
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDK 213
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYK 452
+V A D++P+EI+ HLPA+C + +V Y + +G + + LV + + K
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDK 193
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -2
Query: 249 LNDFQAVSDIVLMVTRFLNKFIYLFGEFFCGHRFRY---YTTMFDFFIVALRFSFNADIS 79
+N + +S+++ M + LN + + E R YT + FF + SFN D++
Sbjct: 57 INARELISELLHMPSNQLNTVVNVNVEVASSELRRMHQEYTKLIHFFENRTQSSFNDDVN 116
Query: 78 LVFLFDRFLLYFTHNFKFL 22
+F F+LYF+ L
Sbjct: 117 AIFNNIIFILYFSRKSSLL 135
>AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical
protein T08D2.5 protein.
Length = 325
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 155 IGFAIILQCSTFSSWLCGSALMLTSAWSSCSTGSCFTLPII 33
I F +L STF+SWL S+ S+ SS S+ C T I
Sbjct: 265 IHFQSLLNTSTFTSWLQSSSFSSASS-SSTSSEQCCTFIFI 304
>Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical
protein F13G3.3 protein.
Length = 501
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 50 SKNRSNRKTRLMSALKLNRKATMKKSNIVV**R--NRWPQKNSPKRYI-NLLRNRVTIRT 220
SKN K + L N K + NI + + NR K+S +R++ NL N +
Sbjct: 371 SKNEEEPKYNPSTGLD-NDKPLISNKNIKMIEKDFNRMSWKSSVRRHLRNLPINMTYSKL 429
Query: 221 ISETA*KSFRSITSG*KGHGFLC 289
IS+ +S+ + S + HG LC
Sbjct: 430 ISDCYKQSYYAFHSANENHGMLC 452
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 189 FIYLFGEFFCGHRFRYYTTMFDFFIV 112
F ++FGEFF H+ R + + F +V
Sbjct: 37 FFWIFGEFFLEHKARVFWRLVQFVLV 62
>Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical
protein T26H5.3 protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 201 FLNKFIYLFGEFFCGHRFRYYTTMFDFFIVALRF 100
F N+F LFG+ FR Y +F + IV L +
Sbjct: 112 FENRFHILFGQNSKWRHFRKYAIVFSYIIVPLYY 145
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 354 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 491
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 354 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 491
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 354 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 491
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 354 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 491
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 354 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 491
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 420 MVLVKEHEDYKDLYEEVKSEIKLLGHP 500
M +VK HE +K E++++E + L HP
Sbjct: 394 MPVVKAHEKHKSFREKLRNETRKLIHP 420
>AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical
protein C09D4.4b protein.
Length = 915
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 420 MVLVKEHEDYKDLYEEVKSEIKLLGHP 500
M +VK HE +K E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 420 MVLVKEHEDYKDLYEEVKSEIKLLGHP 500
M +VK HE +K E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,051
Number of Sequences: 27780
Number of extensions: 304465
Number of successful extensions: 1060
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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