Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20562
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    29   0.052
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    27   0.21 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 634 YFNSYYYNEKEIQSRFYYKNITVN 563
           Y N Y YN      + YYKN  +N
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYIIN 123


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 628 NSYYYNEKEIQSRFYYKNITVN 563
           N+Y YN      + YYKN  +N
Sbjct: 327 NNYKYNYNNYNKKLYYKNYIIN 348


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
 Frame = -2

Query: 234 AVSDIVLMVTRF-------LNKFIYLFGEFFC 160
           AVSD++L+++          + F Y+FGE FC
Sbjct: 96  AVSDLLLLISGLPPEIYYIWSHFPYVFGEAFC 127


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 399 GTMRGCIMVLVKEHEDYKDLYEEVKSE 479
           GT +  I+V        KD+YE+ K+E
Sbjct: 44  GTTKDLILVKKSTAHFVKDIYEKYKNE 70


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -2

Query: 186 IYLFGEFFCGHRFRYYTTMFDFFIVALRFSFNADISLVFLFDRFLLYFTHNFKFLF 19
           I+  GE F    F Y  T     +  L   +  + +++FL  RF  +   NF  LF
Sbjct: 101 IFPKGELFDATVFTYNITNSTPLLKKL---YGGNSTIIFLLIRFKSFSLLNFNLLF 153


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 246 SEALRLGEKGMVFFAGDISPIEIMCHLPAVCE 341
           S  LRL    + F  G   P E +C LP  CE
Sbjct: 563 SGELRLNMSAIQFKLGHPEPPESVCSLP--CE 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,755
Number of Sequences: 438
Number of extensions: 4113
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)