Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20562
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    67   8e-12
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    53   1e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    53   1e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    52   3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    50   1e-06
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            42   3e-04
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    42   4e-04
At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4 f...    28   4.7  
At5g22160.1 68418.m02580 hypothetical protein                          28   4.7  
At5g18140.1 68418.m02130 DNAJ heat shock N-terminal domain-conta...    28   4.7  
At1g36095.1 68414.m04487 hypothetical protein contains Pfam doma...    27   8.2  

>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
 Frame = +3

Query: 249 EALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRG--CIM 422
           +++R G+KG+   AG+ISPI+++ HLP +CEE  V Y Y PS++D+  A  T R   C++
Sbjct: 60  KSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVL 119

Query: 423 VLVK---------EHEDYKDLYEEVKSEIKLL 491
           V++K         E    K  YE+V  +IK L
Sbjct: 120 VMLKPAKGDLTAEELAKLKTDYEQVSDDIKEL 151


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +3

Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
           +K     ++ L  G    V  A D  P+EI+ HLP + E+K+V Y + PS++ +G A G 
Sbjct: 36  KKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV 95

Query: 405 MRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 491
            R  I   V  +E    K   + +K  I+ L
Sbjct: 96  TRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +3

Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
           +K     ++ L  G    V  A D  P+EI+ HLP + E+K+V Y + PS++ +G A G 
Sbjct: 36  KKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV 95

Query: 405 MRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 491
            R  I   V  +E    K   + +K  I+ L
Sbjct: 96  TRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +3

Query: 246 SEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMV 425
           ++ L  G    V  A D  P+EI+ HLP + E+K+V Y + PS++ +G A G  R  I  
Sbjct: 75  TKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIAC 134

Query: 426 LVKEHE--DYKDLYEEVKSEIKLL 491
            V  +E    K   + +K  I+ L
Sbjct: 135 SVTSNEASQLKSQIQHLKDAIEKL 158


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 225 QKRPENRSEALRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGT 404
           +K     ++ L  G    +  A D  P+EI+ HLP + E+K+V Y + PS++ +G A   
Sbjct: 36  KKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDV 95

Query: 405 MRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 491
            R  I   V  +E    K   + +K  I+ L
Sbjct: 96  TRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +3

Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAM-GTMRGCIMVLVKEHED-- 446
           +V  A D+ PIE++  LPA+C + +V YC    +  +GA +      C+ +   ++ED  
Sbjct: 145 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKL 204

Query: 447 -YKDLYEEVKS 476
            +  + E +K+
Sbjct: 205 EFSKILEAIKA 215


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 276 MVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKD 455
           +V  A D+ PIE++  LPA+C + +V YC    +  +GA +       + L     + K 
Sbjct: 144 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKL 203

Query: 456 LYEEVKSEIK 485
            + ++   IK
Sbjct: 204 EFSKILEAIK 213


>At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4
           family;
          Length = 644

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 500 WMTEQFYFTFNFLVQIFIILM 438
           W+  QFY+ F FL  +F+ILM
Sbjct: 528 WLN-QFYYIFGFLFLVFVILM 547


>At5g22160.1 68418.m02580 hypothetical protein
          Length = 353

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 279 VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGC 416
           V FA D         L AVC +  V++   P+ K +G+ +G MR C
Sbjct: 291 VLFAMDTDVSCFNGFLIAVCPDIAVKFTTDPAGKGMGSLLGHMRWC 336


>At5g18140.1 68418.m02130 DNAJ heat shock N-terminal
           domain-containing protein similar to DnaJ protein Tid-1
           [Homo sapiens] GI:17066575; contains Pfam profile
           PF00226 DnaJ domain
          Length = 333

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 152 GFAIILQCSTFSSWLCGSA 96
           G  ++  C TF+SWLCG A
Sbjct: 271 GGILLTLCLTFASWLCGKA 289


>At1g36095.1 68414.m04487 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 301

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 279 PCPFHPDVMLLNDFQAVSDIVLMVTRFLNKFIYLFG 172
           PC  H   ++L D   +S++  ++T+ + K  Y++G
Sbjct: 187 PCAAHCIYLMLEDIGKISEVKTVITQCIFKNDYIYG 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,316
Number of Sequences: 28952
Number of extensions: 273629
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)