Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20561
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 81 2e-16
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 3e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.006
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 35 0.008
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 35 0.008
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.011
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.011
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.019
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.025
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.032
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 33 0.043
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 32 0.057
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.075
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.099
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.099
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.17
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 30 0.23
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.30
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.53
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 0.92
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 0.92
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 0.92
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 0.92
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 28 1.2
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.1
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 2.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 2.8
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 4.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 6.5
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 6.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 6.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 80.6 bits (190), Expect = 2e-16
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPRE 241
Query: 429 -----GKIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGG+ + +++E RNFF++FG +
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRV 273
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 246
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 247 HF 252
+F
Sbjct: 182 YF 183
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G + + D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 38.3 bits (85), Expect = 9e-04
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+F+GGL+ E +DD +R++F +FG +
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEV 189
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 530 DKTKNQRKGFCFITFESEQVVNDLL 604
D T + +GF F+TF++ + VN+++
Sbjct: 197 DSTTGRSRGFGFLTFKNPKCVNEVM 221
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 509 LEVEMPFDKTKNQRKGFCFITFESEQVV 592
L+ + DK + +GF F+T+E+E V
Sbjct: 274 LDATLMMDKDTGRPRGFGFVTYENESAV 301
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGG+ + T++E R+ F
Sbjct: 248 KMFVGGVPGDCTEEEFRNFF 267
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 386
+F G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 35.9 bits (79), Expect = 0.005
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV-----DPK 410
F YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V +P+
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Query: 411 K------AKARHGK-----------IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQ 539
A+ R G +FVG LS ++D++ F G I R P Q
Sbjct: 343 PANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQ 402
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI 509
+FVG LS + D + F E+GTI
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTI 289
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 404
F + G + SI V D T RS G+A++ F E +K + +T+ + D
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 405 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
P K G +F+ L I + + + FS FG I
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKI 194
Score = 35.1 bits (77), Expect = 0.008
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 213 ELGDHR*GAP*SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
E+ D R A F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 374 EVDDERLKA--EFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 94 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 255
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFG 249
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 383
F G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 248 FGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 377
G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 294 GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 354 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTV 127
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 347
F +G + + + +P T SRGF F+ F E
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHG 431
G++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ + G
Sbjct: 116 GQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELTAGGGG 174
Query: 432 K 434
K
Sbjct: 175 K 175
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 515 VEMPFDKTKNQRKGFCFITF 574
V +P DKT ++KG+ F+ F
Sbjct: 121 VRIPTDKTSGRQKGYAFVEF 140
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 405 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
P+ A + +FVGGLS +S++E++ F FG I
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI 329
Score = 29.1 bits (62), Expect = 0.53
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVF 335
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.019
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFK 338
F YG IE I V + TG+S G+AF+VF+
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 384 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 28.3 bits (60), Expect = 0.92
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 413
F +G I S + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.032
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 258 YGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 425
+GE + SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 32.7 bits (71), Expect = 0.043
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 375 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWR 521
E TI K + K + + G ++VG L + ++R +FS+FG + + R
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLR 135
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.3 bits (70), Expect = 0.057
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFG 503
I++G L ++++D+I FSEFG
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFG 55
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.9 bits (69), Expect = 0.075
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+I+VGGLSS I ++ + FS FG++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSV 31
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.099
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 401
G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 29 GPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKE 551
+FV L+ + D++ NFFS+ G I K +T T E
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPI-KHAVVVTNPETGE 44
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.099
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 345 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRC 524
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ K
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 525 PLTKQRTKER 554
P + R R
Sbjct: 76 PFRRVRRGTR 85
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 142 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHF 252
D+ H SAE P + DD ++FVG LS T E+R F
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLF 64
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 359
F +G+I S V D TG S +AFI F ES++K
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTK 536
+FVGGL+S +S+ +++ F FG I + P K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF 335
F +G I+ + + D TGR++GFAF+ +
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHF 252
RDD L V LS +T ++ELRD F
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLF 222
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.53
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 426 HGKIFVGGLSSEISDDEIRNFFSEFGTI*K 515
H ++FVG L ++++D+ + FSE+ ++ K
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVK 58
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 0.92
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 207 WAELGDHR*GAP*SFWAYGEIESINVKTDPNT 302
WA G + +P + Y E+ES++VK++ +T
Sbjct: 157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDT 188
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 0.92
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITF 574
+V MP DK N KGF +I F
Sbjct: 351 QVHMPIDKKTNNPKGFAYIDF 371
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 0.92
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDPKKAKAR 425
F +G I+S + + P+T S+G+ F+ F P E++ + K++ A+ R
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Query: 426 HGK 434
+
Sbjct: 501 EDR 503
Score = 25.4 bits (53), Expect = 6.5
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +3
Query: 363 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQR 542
M A E K KK + I+VG L S ++ F FG K+ L++++
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 543 TKERASVSSHL 575
K S S L
Sbjct: 57 NKSTDSKSPTL 67
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.92
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +3
Query: 399 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 440
GE+E V +P + ++F K+ A +++ +++DP K A +
Sbjct: 351 GEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVSALQQMLI 410
Query: 441 VGGLS 455
GG++
Sbjct: 411 AGGVN 415
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 312 RGFAFIVFKAPESIDKVMAAGEHTINNKK 398
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 395
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 203 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 90
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = -2
Query: 455 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 276
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 275 TLYFTVCP 252
TL + P
Sbjct: 1251 TLAARILP 1258
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI 509
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 419 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 258
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
G + + D +GRS+G A++ F +S+ +A
Sbjct: 264 GPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHF 252
++VG L W T+D+ L D F
Sbjct: 282 IYVGNLPWATSDRNLLDLF 300
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI 509
+F+G L S + EI F +FG I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKI 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,288
Number of Sequences: 5004
Number of extensions: 50410
Number of successful extensions: 228
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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