Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20561
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 72 3e-13
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 58 6e-09
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 54 1e-07
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 53 2e-07
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 48 4e-06
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 46 3e-05
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.005
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.008
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 37 0.011
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 36 0.019
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 36 0.025
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.034
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.078
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.10
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 33 0.14
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.18
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.31
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 31 0.55
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 31 0.96
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.96
SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 30 1.3
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34) 30 1.3
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_28750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 30 1.7
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 29 2.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 2.2
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 29 2.9
SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2) 29 2.9
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 29 3.9
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 28 5.1
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017) 28 5.1
SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6) 28 6.7
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 28 6.7
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 27 8.9
SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 27 8.9
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_39141| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07) 27 8.9
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_19847| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2) 27 8.9
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 27 8.9
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 27 8.9
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F +GE++ V DP T RSRGF F+ FK P+++D V+ +G +++D KK
Sbjct: 128 FEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGA-----QELDGKKMVTTT 182
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
KIF+GGLS+ S+++++ +FS+FG +
Sbjct: 183 KKIFIGGLSTNTSEEDMKKYFSQFGKV 209
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/21 (38%), Positives = 18/21 (85%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHF 252
+K+F+GGLS T++++++ +F
Sbjct: 183 KKIFIGGLSTNTSEEDMKKYF 203
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD-----PKK 413
F +GEI+ VK DPNT RSRGF F+ FK E V++ H I + + PK+
Sbjct: 135 FTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST-SHRIQGRLCEVRLPRPKE 193
Query: 414 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVG L ++ + +F++FG +
Sbjct: 194 ELNVPKKLFVGRLPESTTEKTLMEYFAQFGEV 225
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/83 (39%), Positives = 43/83 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F YGE+ +++K D TGR RGFAF+ FK D + I K R
Sbjct: 49 FSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDPKPAAPIG------KPPHLRV 102
Query: 429 GKIFVGGLSSEISDDEIRNFFSE 497
KIFVGGL E SD++IR +F +
Sbjct: 103 KKIFVGGLKPETSDEKIREYFGK 125
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 255 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
AY ++ I T+ ++ R RGF F+ F + +++DK+ H I KV+ K+A
Sbjct: 126 AYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRA 179
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
G S D N DD KLFVGGLS+ETT + L+++F
Sbjct: 12 GTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYF 49
Score = 35.1 bits (77), Expect = 0.044
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDL 601
E+E + + N+R+GFCF++F+SE V+ +
Sbjct: 132 EIEYITEHSSNRRRGFCFVSFDSEDTVDKI 161
Score = 34.3 bits (75), Expect = 0.078
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+FVGGLS E + + ++ +FS++G +
Sbjct: 29 GKLFVGGLSYETTKESLKEYFSKYGEL 55
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHFG 255
+K+FVGGL ET+D+++R++FG
Sbjct: 103 KKIFVGGLKPETSDEKIREYFG 124
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/75 (30%), Positives = 50/75 (66%), Gaps = 11/75 (14%)
Frame = +3
Query: 303 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK-----------AKARHGKIFVGG 449
GRSRGF F+ +++ +S+++V+ +H +++++++PK+ A ++ KIFVGG
Sbjct: 86 GRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGG 145
Query: 450 LSSEISDDEIRNFFS 494
L+S +++I+ +F+
Sbjct: 146 LASTTVEEDIKEYFN 160
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 GEIESINVKTD-PNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 419
GE+ +++K D N R RGFAF+ F E ++KV A H I K+ + KKA+
Sbjct: 169 GEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAE 222
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHF 252
RK+F+GGL+W TT++ L+D+F
Sbjct: 50 RKIFIGGLNWNTTEEGLKDYF 70
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/26 (42%), Positives = 22/26 (84%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIF+GGL+ +++ ++++FS++GTI
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTI 76
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHF 252
RK+FVGGL+ T +++++++F
Sbjct: 139 RKIFVGGLASTTVEEDIKEYF 159
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/87 (34%), Positives = 46/87 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F +GE+ES+ + G SR + F++FK + K + H IN K VD K++
Sbjct: 100 FEQFGEVESVRIMRT-FLGYSRNYGFVLFK-DDGPSKEVLKKSHVINGKTVDVGKSR-NF 156
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
I+VGGL S ++ +R F +FG I
Sbjct: 157 RVIYVGGLPSHFTEQTVREHFKKFGVI 183
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 401
F YG++ +++ TD TG+S+G + + P +++K++ H I +V
Sbjct: 339 FRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPVHVIGKSQV 389
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 387 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
N+ PK + +FVGGL+S ++ ++++F +FG +
Sbjct: 66 NSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEV 106
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/85 (30%), Positives = 46/85 (54%)
Frame = +3
Query: 300 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEI 479
+G+S+GFAF+ + E+++ V+ +H I+N V +K + + K+ + + S I + +I
Sbjct: 79 SGKSKGFAFVRLRKKEAVESVLGRDDHVIDNSDVSMEK-QDTYRKVILKNIPSSIGESQI 137
Query: 480 RNFFSEFGTI*KWRCPLTKQRTKER 554
FS G I P +TKER
Sbjct: 138 LEHFSSSGEIASVYIP-ENLKTKER 161
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Frame = +3
Query: 312 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------------------KARH 428
+GF F+ F+ P +I+ V+A H ++ K +DPK A A
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+F+GGL+ ++++++ +FS +G +
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFSTYGMV 228
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/26 (42%), Positives = 22/26 (84%)
Frame = +1
Query: 175 GRDDDRKLFVGGLSWETTDKELRDHF 252
G +D K+F+GGL++ TT+++L+++F
Sbjct: 197 GSANDGKVFIGGLAFGTTEEDLKEYF 222
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3
Query: 291 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 425
D T R RGF F+ F++ S DK H INNKKV+ KKA+ +
Sbjct: 5 DKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 527 FDKTKNQRKGFCFITFESE 583
FDK + +GF F+TFESE
Sbjct: 4 FDKATQRHRGFGFVTFESE 22
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 44.4 bits (100), Expect = 7e-05
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 15/93 (16%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF---KAPESI--DKVMAAGEHTINNKKVDPKK 413
F AYGE+ + V D T +SRGF ++ F K ++ DKV G H I+ K+V+ K+
Sbjct: 34 FEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKV-ENGAHRIDGKEVEVKR 92
Query: 414 AKARHG----------KIFVGGLSSEISDDEIR 482
A R KIFVGGL + + ++I+
Sbjct: 93 AIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQ 125
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 157 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
N E D KLFVGGL+ ETT++ LR++F
Sbjct: 3 NRQENTNNDPRAKLFVGGLNRETTNETLREYF 34
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E +++ +R +F +G +
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGEL 40
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK--KVD---PK 410
F G + S + D TG+S G+AF+ + P+ +K V + NK KV P
Sbjct: 47 FGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPS 106
Query: 411 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ ++ +++ GL ++ ++E+ F FG I
Sbjct: 107 STEIKNANLYISGLPKDMKEEEVEALFKPFGKI 139
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----AKAR- 425
GEI ++ DP TG ++GFAF F S + + T+N+K + P + K+R
Sbjct: 177 GEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAIT----TLNDKDIRPGRRLAICKSRS 232
Query: 426 HGKIFVGGLSSEISDDEIRNFFSEFGT 506
+ ++FV G+ S +EI FS+ T
Sbjct: 233 NSRLFVKGIPKRKSKEEIFQEFSKVTT 259
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Frame = +3
Query: 264 EIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGE-HTINNKKVDPKKAKARHG-- 431
++ S+++ P G+SR F F+ F + ID ++ E H+I+NK+V+ K+A R
Sbjct: 38 DVSSVSLAKTPE-GKSRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPRDDPN 96
Query: 432 --------KIFVGGLSSEISDDEIR 482
K+F+GGL E S+++++
Sbjct: 97 ELAHVRTKKLFIGGLKDEHSEEDVK 121
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 509 LEVEMPFDKTKNQRKGFCFITFESEQVVNDL 601
LE++M D+ N+ KG+CF+ F +E +V+ L
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKL 163
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Frame = +1
Query: 181 DDDR--KLFVGGLSWETTDKELRDHF 252
DD + KLFVGGL+ +TT++ +R +F
Sbjct: 3 DDSKLMKLFVGGLNEDTTEETVRAYF 28
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEF 500
K+FVGGL+ + +++ +R +F F
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSF 31
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 276 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
I + D T + +G+ F+ F +DK+ + K V+ KKA
Sbjct: 135 IKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 434
G+I S+ V TDP G+S+GF F+ F+ PE ++ + + +N K++ ++ A K
Sbjct: 133 GKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAV----NVLNGKEIGGRRLWAGRAK 185
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F YG I S V D + G S+GF F+ F +PE K +
Sbjct: 232 FSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAV 269
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 270 ESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
E++N+ TD TGR RGF F+ F + E ++K +
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAI 154
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESI 353
G +E++ + TD NTG+ R F F+ F +P S+
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSV 511
>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = -3
Query: 376 SPAAMTLSIDSGALNTMKANPRDLPVFGSVFTLILSISPYAQNDHGAPYLWSPSSAHQQK 197
SP A++ +D G +A +++P F TL L + P+A G P ++PSS H++
Sbjct: 371 SPDALSKGLDMGWGALSRAGVQEMPAFP---TLRLPLHPFASTGFGTPAFYNPSSYHRE- 426
Query: 196 VFCRHRVLGP 167
+ VLGP
Sbjct: 427 ---YYPVLGP 433
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--DPK 410
F YG IE +++ TG+S+GF ++ ++ ES + + AG H I+ K V +PK
Sbjct: 83 FGPYGAIEDLSI-IRTQTGKSKGFGYVTYENAESAQRAL-AGTHIIDGKWVIAEPK 136
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F YG ++++++ TD SRGFA++ + PE +K +
Sbjct: 1177 FSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGG+ E DD +R FF++FG I
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFGEI 36
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.5 bits (78), Expect = 0.034
Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES-------IDKVMAAGEH-----TIN 389
+F +G I I++ DP + +GFAF+ + PE+ ++ V+ G + N
Sbjct: 121 AFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSN 180
Query: 390 NKKVDP-----KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQ 539
+ P ++ ++ +I++ + ++ +D+I++ F FG + C L+K+
Sbjct: 181 VPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKV--VHCSLSKE 233
Score = 31.1 bits (67), Expect = 0.72
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
F A+G++ ++ +P TG+ +G+ FI ++ +S + +A+
Sbjct: 219 FEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 273 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
S+ V TD TGR RGF F+ F + + +DK +
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAI 67
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 264 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKV---MAAGEHTINNKKVDPKKAKARHGK 434
++ + V +D T R RGFAF+ F + ++++ + E + KV+ +++ + G
Sbjct: 254 DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQRGG 313
Query: 435 IFVGGLSS 458
GG S
Sbjct: 314 GRGGGYRS 321
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 34.3 bits (75), Expect = 0.078
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 264 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
++ + V TD TGR RGF F+ F + E ++K +
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKAR 425
F G + ++++ D T +G+ F+ F E D + + K + KA A
Sbjct: 33 FLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAH 92
Query: 426 H------GKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ +F+G L +E+ + + + FS FG I
Sbjct: 93 NKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVI 126
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 246 SFWAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 389
+F A+G I ++ + D +TG S+GFAFI F + ++ D + A G++ N
Sbjct: 119 TFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN 169
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK-----AKAR 425
G I + DP +G ++GFAF F + + ++NK++ P K
Sbjct: 176 GHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAV----KKLDNKEIRPGKRLGVCISVA 231
Query: 426 HGKIFVGGLSSEISDDEIRNFFSE 497
+ ++FVG + S EI FS+
Sbjct: 232 NSRLFVGSIPKTKSKQEILEEFSK 255
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 393 KKVDPK--KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
KK+ PK + + G I++G + ++EI+ FF +FGT+ + R +K+ + +
Sbjct: 84 KKIKPKGDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSK 139
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 380
F +G + I + + RS+G+AF+ F A + + K+ A H
Sbjct: 118 FEQFGTVNRIRLSRSKKSARSKGYAFVEF-ACDEVAKIAADTMH 160
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 342 PESI-DKVMAAGEHTIN-NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
PE++ D+++ + ++N + D + K+FVGGL +I +DEI F FG++
Sbjct: 313 PENLADQIVPSLASSLNCSPNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSL 370
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 22/100 (22%)
Frame = +3
Query: 276 INVKTDPNTGRSRGFAFIVF-------KAPESIDKVMAAGEHTINN---KKVDPKKAKAR 425
+ V DP +S+GF F+ F KA +D V G+ N +K +P + K
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPL 601
Query: 426 ------------HGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ ++VG L ++ D E++ FS++G+I
Sbjct: 602 VWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYGSI 641
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F YG++ I + D NT SRGFAF+ F + M
Sbjct: 36 FKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/75 (18%), Positives = 34/75 (45%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F G +ES+ + D TG +GF +++F++ +++ + +K+ +K +
Sbjct: 76 FTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSKDKP 135
Query: 429 GKIFVGGLSSEISDD 473
F+ + D+
Sbjct: 136 QTEFISHIQVRFRDN 150
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 440
G + V +P G SRGFAF+ + E +K G+ N ++V+ + +G
Sbjct: 230 GNVTFAQVAINPANGGSRGFAFVDYATAEEAEK----GQRAHNGRQVEGSNIRVAYGS-- 283
Query: 441 VGGLSSEISDDEIRNFFSEFGTI 509
G + I ++ N + + T+
Sbjct: 284 PGRTGASILGSQLDNTQAGYTTV 306
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
F YG++ + + D T SRG AFI+F +S +AA
Sbjct: 30 FERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +1
Query: 73 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
ND+ A D++ ++ + G+ +NGG D+ ++++ + D+ ++ D E+ DH
Sbjct: 180 NDDSASDVSIEDIIYGDDDNGGDDNDNYDNDDDYDGDNYND---ENDDYDHNDVEMADHM 236
Query: 253 GHT 261
H+
Sbjct: 237 DHS 239
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 31.5 bits (68), Expect = 0.55
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKA 416
SF +G + +++K P G+ +AF+ F + K A + N+ K+ ++
Sbjct: 256 SFEKFGVVLDVDIKR-PARGQGNTYAFVKFADLDVAAKAKCAMQGQCIGRNHIKIGYGRS 314
Query: 417 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ + +++VGGL IS E+ F FG I
Sbjct: 315 Q-QTTRLWVGGLGPWISIPELEREFDRFGAI 344
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 31.5 bits (68), Expect = 0.55
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 353
+F +G +E +++ D +GRSRGF F++ ++ + I
Sbjct: 28 AFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIF+GGL + +++D+++ S FG +
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGEL 699
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 255 AYGEIESINVKTDPNTGRSRGFAF 326
++GE+ + N+ D TG S+G+AF
Sbjct: 695 SFGELRAFNLVKDSATGLSKGYAF 718
>SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 73 NDNFAQDITTDNQLNGNAENGGGDSQDH-NSAEAPGRDDD 189
ND+ DI D+ NGN + G D+ D N E G DDD
Sbjct: 20 NDDDGDDIDDDDG-NGNGNDNGDDNDDDDNDDEGNGDDDD 58
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+IFV G + E ++ E+R FF E+G +
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVV 34
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
F +G+I V D T S+G AF+ +++ ES+ + +AA
Sbjct: 436 FKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAA 476
>SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAE----NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKE 237
+ND D D+++NG + N GGD D + + DDD + G S++ D +
Sbjct: 58 DNDGGDDDDDDDDEVNGGNDDDDFNNGGDCDDDDDDDDDDDDDDDDINKKGASYDDDDDD 117
Query: 238 LRDHF 252
D +
Sbjct: 118 DDDGY 122
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFI---VFKAPESIDKVMAAGEHTINNKKVD 404
F YGEI++++V D TG +G+A + FK +S + + E N VD
Sbjct: 313 FSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVG +S ++++R FS FGTI
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTI 240
>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
Length = 722
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 388 LMVCSPAAMTLSIDSGALNTMKANPRDLPVF-GSVFTLILSISPYAQNDHGAPYLWSPSS 212
L + P+A++ +I K P LPV G+ +T S +N H YLW
Sbjct: 525 LPITFPSAVSGTISPYLDIVNKYTPHGLPVVRGNEYTPHGSPVARGKNTHKTGYLWPRER 584
Query: 211 AHQQKVFCRH 182
H +V C H
Sbjct: 585 IHTTRVTCCH 594
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 196 LFVGGLSWETTDKELRDHF 252
L+VGGL + T+++LRDHF
Sbjct: 306 LYVGGLEGKVTEQDLRDHF 324
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI 509
++VGGL ++++ ++R+ F +FG +
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGEL 330
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKL--------FVGGLSWE 222
NN+N D +DN + N++N ++ D+N+ R D ++ ++ GL+WE
Sbjct: 613 NNNNNNNDNNSDNNSDNNSDNNSDNNSDNNNDNNSERGADPEIKRGKNPEGWIRGLNWE 671
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
NNDN + + +N N N N ++ D+NS + D
Sbjct: 597 NNDNNSDNNNNNNNNNNNNNNNNDNNSDNNSDNNSDNNSD 636
>SB_28750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
NN+N + +N N N N ++ D NS E DDD
Sbjct: 18 NNNNNNNNNNNNNNNNNNNNNNNNNNNDDNSDEDDDDDDD 57
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
++F+G L S + D ++ FS++GTI
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 347
+F +G+I + + D T + RGF F+ F+ E
Sbjct: 24 AFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAE 57
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
+FVG + E S+++++ FSE G + +R ++ K +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPK 66
>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAE-NGGGDSQDHNS 162
NND+ D T D+ N N + NGGG D+N+
Sbjct: 193 NNDDDDDDDTDDDDHNNNDDDNGGGGDDDNNN 224
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
NN N TT+N N N N D D + +DD
Sbjct: 173 NNINTTTTTTTNNNNNNNNNNNDDDDDDDTDDDDHNNNDD 212
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 73 NDNFAQDITTDNQLN-GNAENGGGDSQDHNS 162
+DNF DI+ D LN G A N + ++NS
Sbjct: 335 HDNFNDDISNDGNLNGGGANNNNNKNNNYNS 365
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 267 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
I+ + K+ N G++ G AF+VFK+ K + I ++ ++
Sbjct: 361 IDLLKHKSGKNQGKNTGVAFVVFKSNNDASKALKMDRSYIGHRYIE 406
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 390 NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+K + K + K+FVG + ++ E+++FF FG +
Sbjct: 66 SKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFGDV 105
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
NN+N +I +N N N N ++ ++N+ + DDD
Sbjct: 112 NNNNNNNNINNNNNNNNNNNNNNNNNNNNNNNDDDDDDDD 151
>SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2)
Length = 244
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 67 ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
A N+ +A+ +T +N N N N ++ ++N+ DDD
Sbjct: 160 AINEKYAKIMTDNNNNNNNNNNNNNNNNNNNNNNNNNNDDD 200
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 267 IESINVKTDPNTGRSRGFAFIVFKAPES 350
+ + V TD TGR RGF F+ +A ++
Sbjct: 107 VVDVRVITDRETGRPRGFGFVTLEAKKT 134
>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
++DN D DN NG+ ++ D D + +A DDD
Sbjct: 61 DSDNNYDDNDDDNDDNGDDDDNDDDDDDDDDDDADDDDDD 100
>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 76 DNFAQDITTDNQLNGNAENGG-GDSQDHNSAEAPGRDDD 189
D + D D+ + + +N G GD D+ AE G DDD
Sbjct: 821 DYYYDDDDDDDDDDDDGDNDGDGDGDDYGDAENYGEDDD 859
>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 192 SVVIASWGLSTVMILRITATVLCISIKLV 106
++++ S G++ L ITAT+LC SI L+
Sbjct: 267 TILLESSGVTLPKALHITATILCYSISLL 295
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 130 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 246
NGG + D + A R++ +LFV GL E ++ +LR+
Sbjct: 603 NGGKSTDDASDAAYELRNEGVELFVVGLGDENSEAQLRE 641
>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
Length = 691
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQD 153
+++++A D DN +NG+ ++GGGD D
Sbjct: 585 DDEDYAGD--GDNDVNGDGDSGGGDDDD 610
>SB_46960| Best HMM Match : Neuromodulin (HMM E-Value=3.6)
Length = 557
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
+N+N +DI N EN GG+S + N + DD+
Sbjct: 147 SNNNEDEDIQEVEDDNEGKENDGGESDEENDDDDEDGDDE 186
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 258 YGEIESINVK---TDPNTGRSRGFAFIVFKAPESIDKVM 365
+GEIE PN G RG+ F+ FK E K +
Sbjct: 410 FGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGN--AENGGGDSQDHN 159
NNDN+ + DN N N NG DS D+N
Sbjct: 90 NNDNYDNNGNNDNNDNYNNYDNNGNNDSNDNN 121
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 67 ANNDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRK 195
+N+DN D +T N N N EN D S +NS + DD K
Sbjct: 103 SNSDNSNTDNSTSN--NSNPENSTSDNSNSNNSNQDNSNSDDSK 144
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 67 ANNDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRK 195
+N+DN D +T N N N EN D S +NS + DD K
Sbjct: 289 SNSDNSNTDNSTSN--NSNPENSTSDNSNSNNSNQDNSNSDDSK 330
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
+++D + E G+ LFVG L ++ T +++ DHF
Sbjct: 58 ETEDVITKEQDGKKQRYILFVGNLPFDLTTEKVLDHF 94
>SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 232 YLWSPSSAHQQKVFCRHRVLGPQH 161
YLW+PS Q +V R+R G H
Sbjct: 143 YLWTPSGLSQSQVRSRNRANGTTH 166
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 419
+F YG IE + V D T +RG ++ F S +A E N DPK K
Sbjct: 42 AFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASS--AALACEEMDGRNIGDDPKPIK 97
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGG 210
++D D D+ + G+ ++ GD D + + G DDD + GG
Sbjct: 248 DDDGEVDDAGGDDGVGGDNDDDRGDDGDDDEDDDRGNDDDEDDWGGG 294
>SB_39141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
NN+N + +N N N N D D + + DDD
Sbjct: 87 NNNNNNNNNNNNNNNNNNNNNNNNDDDDDDDDDDDDNDDD 126
>SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
NN N ++ DN + +A+N D D+N+ + G DD
Sbjct: 14 NNGNDDENNYNDNHNDKDADNKNNDDGDNNNNDKCGYKDD 53
>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGN--AENGGGDSQDHN 159
NNDN+ + DN N + NG DS D+N
Sbjct: 192 NNDNYDNNDNNDNNDNNDNYDNNGNNDSNDNN 223
>SB_19847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 103 DNQLNGNAENGGGDSQDHNSAEAPGRDDD 189
DN + + ++GGGD D N + G DDD
Sbjct: 92 DNDDSNDVDDGGGDGDDDNDGD--GVDDD 118
>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
Length = 610
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 67 ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEA 171
ANN N A + N N NA N ++ + N+A A
Sbjct: 254 ANNANNANNANNANANNANANNANANNANANNANA 288
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 413
F +G++ +++ + G +GFAFI F++ + + V+ KK + ++
Sbjct: 108 FSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESKTKKEEKRE 162
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 509 LEVEMPFDKTKNQRKGFCFITFESEQ 586
L V +P K + KGF FI FES+Q
Sbjct: 115 LYVSLPRFKHNGEIKGFAFIEFESKQ 140
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 427 MGRFLSEDSAVKSQMMKSETSSVNLELF 510
+ RFL++DS +S + ++ SVNL LF
Sbjct: 295 LARFLNKDSLSESAAVPGQSDSVNLGLF 322
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,932,703
Number of Sequences: 59808
Number of extensions: 386472
Number of successful extensions: 2622
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2421
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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