Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20561
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 69 2e-12
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 69 2e-12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 58 3e-09
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 58 3e-09
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 58 3e-09
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 58 6e-09
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 57 1e-08
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 54 1e-07
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 53 1e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 53 1e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 2e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 7e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 3e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 45 4e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 45 4e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 44 6e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 3e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 3e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 42 3e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.001
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 40 0.001
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 40 0.001
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 0.001
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 40 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 34 0.002
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 39 0.003
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 39 0.003
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 39 0.003
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 39 0.003
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 39 0.003
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.004
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.005
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 38 0.007
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.007
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.009
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.009
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 37 0.009
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 37 0.009
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 37 0.012
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.016
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.016
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.016
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.016
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.016
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 36 0.021
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.021
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 36 0.021
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 36 0.021
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.021
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 36 0.028
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 36 0.028
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 35 0.036
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.036
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.048
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.048
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 35 0.048
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 34 0.064
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 34 0.064
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 34 0.064
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 34 0.064
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 34 0.064
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 34 0.064
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 34 0.064
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 34 0.064
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 34 0.064
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.084
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 34 0.084
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.084
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 34 0.084
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.084
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.084
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.084
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.11
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 33 0.11
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 33 0.11
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.11
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.11
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.11
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.19
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.19
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.19
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.19
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.26
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 32 0.26
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.26
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.26
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 32 0.34
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.34
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.45
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.45
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 31 0.45
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.45
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.45
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 31 0.45
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 31 0.59
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.59
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.59
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 31 0.59
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 31 0.59
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 0.59
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 31 0.59
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.59
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 31 0.59
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.78
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 31 0.78
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 0.78
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.78
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 30 1.0
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 30 1.0
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 30 1.0
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 30 1.0
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.4
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 30 1.4
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 30 1.4
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.4
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.4
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 1.8
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.8
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 29 1.8
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 29 2.4
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 2.4
At2g47390.1 68415.m05915 expressed protein 29 2.4
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 2.4
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 3.2
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 3.2
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 3.2
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 3.2
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 3.2
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 3.2
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 29 3.2
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 3.2
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 28 4.2
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 28 4.2
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 4.2
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 28 4.2
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 28 4.2
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 4.2
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 4.2
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 4.2
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 5.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 5.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 5.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 5.5
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 28 5.5
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 7.3
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 27 7.3
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 27 7.3
At2g33440.1 68415.m04099 splicing factor family protein similar ... 27 7.3
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 7.3
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 9.6
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 9.6
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 9.6
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 9.6
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 9.6
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 27 9.6
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 68.9 bits (161), Expect = 2e-12
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 422
F YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKG 97
Query: 423 RHG---------KIFVGGLSSEISDDEIRNFFSEFGTI 509
G KIFVGG+ S +++DE+++FF+++G +
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNV 135
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPK 410
F YG + V D T RSRGF F++F + E +D++++ G + + KK +PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 411 KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 503
K+ R + S+D ++ +G
Sbjct: 189 KSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 503 NYLEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
N +E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 255
G S++ N G K+F+GGL +TT+ HFG
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFG 40
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 420 ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
A GKIF+GGL + ++ F ++G I
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEI 45
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 68.9 bits (161), Expect = 2e-12
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 422
F YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKG 97
Query: 423 RHG---------KIFVGGLSSEISDDEIRNFFSEFGTI 509
G KIFVGG+ S +++DE+++FF+++G +
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNV 135
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 374
F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 503 NYLEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
N +E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 136 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 255
G S++ N G K+F+GGL +TT+ HFG
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFG 40
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 420 ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
A GKIF+GGL + ++ F ++G I
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEI 45
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F YGEI + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPRG 120
Query: 429 G---------KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGG+ S + DDE + FF +FG +
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGEL 156
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 425
F +GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 88 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 255
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFG 63
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GKIFVGGL+ E + E F ++G I
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEI 68
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 530 DKTKNQRKGFCFITFESEQVVNDLL 604
D + + +GF F+T+ESE +V+ LL
Sbjct: 164 DHSTGRSRGFGFVTYESEDMVDHLL 188
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------ 410
F +GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRG 144
Query: 411 ------KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
KA ++ KIFVGGL + +DE++N+F +G I
Sbjct: 145 DKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDI 183
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 425
F YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+ +
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +1
Query: 97 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 255
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFG 87
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+FVGG+S E + + N+F +FG +
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEV 92
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 425
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 426 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFGTI 509
HG KIFVGGL S I+++E +N+F +FGTI
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 36.3 bits (80), Expect = 0.016
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGH 258
KLF+GG+SW+T ++ LRD+F +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.9 bits (74), Expect = 0.084
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+F+GG+S + ++ +R++FS +G +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDV 32
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D + +GF FITF+S+ V+ +L
Sbjct: 138 DVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 425
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 426 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFGTI 509
HG KIFVGGL S I+++E +N+F +FGTI
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 36.3 bits (80), Expect = 0.016
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGH 258
KLF+GG+SW+T ++ LRD+F +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.9 bits (74), Expect = 0.084
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+F+GG+S + ++ +R++FS +G +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDV 32
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D + +GF FITF+S+ V+ +L
Sbjct: 138 DVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 425
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 426 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFGTI 509
HG KIFVGGL S I+++E +N+F +FGTI
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTI 136
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 36.3 bits (80), Expect = 0.016
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFGH 258
KLF+GG+SW+T ++ LRD+F +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.9 bits (74), Expect = 0.084
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+F+GG+S + ++ +R++FS +G +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDV 32
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D + +GF FITF+S+ V+ +L
Sbjct: 138 DVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 57.6 bits (133), Expect = 6e-09
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 28/115 (24%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 425
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 35 FGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRD 93
Query: 426 ------------------HG---------KIFVGGLSSEISDDEIRNFFSEFGTI 509
HG KIFVGGL S I++ E +N+F +FGTI
Sbjct: 94 DQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTI 148
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 35.1 bits (77), Expect = 0.036
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHFG 255
KLF+GG+SW+T ++ L+++FG
Sbjct: 16 KLFIGGISWDTDEERLQEYFG 36
Score = 30.7 bits (66), Expect = 0.78
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKERA 557
GK+F+GG+S + ++ ++ +F ++G + + + RT RA
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDL--VEAVIMRDRTTGRA 55
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D + +GF FITF+SE+ V+ +L
Sbjct: 150 DVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 26 FTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSRE 84
Query: 429 -------------------------GKIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGGL ++D+E R +F +G +
Sbjct: 85 EQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPV 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 130 FEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Query: 429 GKIFVGGLS 455
GG S
Sbjct: 190 ANPGGGGRS 198
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHF 252
D KLFVGG+SWET + +LR+HF
Sbjct: 4 DQGKLFVGGISWETDEDKLREHF 26
Score = 34.3 bits (75), Expect = 0.064
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+FVGG+S E +D++R F+ +G +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEV 32
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D+ N+ +GF F++F+SE V+ +L
Sbjct: 138 DVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 88 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHF 252
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYF 130
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 429 G---------------------KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGGL+S +++ E + +F++FG I
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 132
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
KLF+GG+SWET++ LRD+F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 35.1 bits (77), Expect = 0.036
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+F+GG+S E S+D +R++F FG +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEV 32
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 169 APGRDDDRKLFVGGLSWETTDKELRDHF 252
+PG + +K+FVGGL+ T+ E + +F
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYF 126
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 429 G---------------------KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGGL+S +++ E + +F++FG I
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 132
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
KLF+GG+SWET++ LRD+F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 35.1 bits (77), Expect = 0.036
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+F+GG+S E S+D +R++F FG +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEV 32
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 169 APGRDDDRKLFVGGLSWETTDKELRDHF 252
+PG + +K+FVGGL+ T+ E + +F
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYF 126
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 53.6 bits (123), Expect = 1e-07
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F +GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 26 FSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSRE 84
Query: 429 -------------------------GKIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGGL ++ DE R +F +G +
Sbjct: 85 EQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPV 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F YG + + D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 130 FETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 34.7 bits (76), Expect = 0.048
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 184 DDRKLFVGGLSWETTDKELRDHFGH 258
D KLF+GG+SW+T + LR++F +
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSN 28
Score = 33.1 bits (72), Expect = 0.15
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFGTI 509
GK+F+GG+S + ++ +R +FS FG +
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEV 32
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 23/109 (21%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 416
F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 417 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFGT 506
R KIFVGGL S +++ + + +F +FGT
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGT 133
Score = 35.9 bits (79), Expect = 0.021
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHF 252
+ D+ KLF+GG+SW+T ++ L+++F
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYF 26
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 426 HGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKERA 557
+GK+F+GG+S + +++ ++ +FS FG + + K RT RA
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEV--IEAVILKDRTTGRA 46
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 121 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
N N S S PGR RK+FVGGL T+ + + +F
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYF 128
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D + +GF FIT++SE+ V +L
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 23/109 (21%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 416
F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 417 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFGT 506
R KIFVGGL S +++ + + +F +FGT
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGT 133
Score = 35.9 bits (79), Expect = 0.021
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +1
Query: 178 RDDDRKLFVGGLSWETTDKELRDHF 252
+ D+ KLF+GG+SW+T ++ L+++F
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYF 26
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 426 HGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKERA 557
+GK+F+GG+S + +++ ++ +FS FG + + K RT RA
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEV--IEAVILKDRTTGRA 46
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 121 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
N N S S PGR RK+FVGGL T+ + + +F
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYF 128
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+V + +D + +GF FIT++SE+ V +L
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 428
+G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A +
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVATPKEEMR 84
Query: 429 ------GKIFVGGLSSEISDDEIRNFFSEFGTI 509
+IFV + S +S+ + R+ F +G I
Sbjct: 85 QPAKKVTRIFVARIPSSVSESDFRSHFERYGEI 117
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
KIFVG L E S D++R++F FG I P +R+ R
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHR 281
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 401
F +G I+ + DP RGF F+ F D+V A H I ++V
Sbjct: 260 FGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEV 309
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 512 EVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
++ MP D Q +G FITF S V DL+
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 154 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 255
+ E R K+FVG L E + +LRD+FG
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFG 261
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.5 bits (78), Expect(2) = 2e-06
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 420 ARHGKIFVGGLSSEISDDEIRNFFSEFG 503
+R KIFVGGLSS +++E +++F FG
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 33.1 bits (72), Expect = 0.15
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGG++ E S++ ++ +FS +G +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAV 32
Score = 33.1 bits (72), Expect(2) = 2e-06
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F YG + V + TG+ RGF F+ F + K + H I K VD +KA +H
Sbjct: 26 FSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKH 84
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 190 RKLFVGGLSWETTDKELRDHF 252
+K+FVGGLS TT++E + +F
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYF 140
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 181 DDDR-KLFVGGLSWETTDKELRDHF 252
D DR KLFVGG++ ET+++ L+ +F
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYF 26
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.9 bits (79), Expect(2) = 7e-06
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 348 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWR 521
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG + +
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 522 CPLTK 536
P+ K
Sbjct: 352 IPVGK 356
Score = 31.1 bits (67), Expect(2) = 7e-06
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVF 335
Y ++S V D NTGRS+G+ F+ F
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 401
+F A+G I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 152 TFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 402 ----DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 503
DP K + ++V LS +SD+E+ F EFG
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 401
+F G++ S+ V D T RS G+ ++ + P+ + + +N + +
Sbjct: 64 AFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
Query: 402 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
DP K+ G IF+ L I + FS FG I
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPI 159
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 417 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
K++ ++V L ++DD++R F+ FGTI
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTI 353
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F +G I S V DP+ G SRG F+ F PE + +
Sbjct: 347 FAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 404
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 405 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ + K+FVG L +S+ E+++ FS++GTI
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 404
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 405 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ + K+FVG L +S+ E+++ FS++GTI
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTI 132
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 53 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 357 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 59
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 169 APGRDDDRKLFVGGLSWETTDKELRDHF 252
+PG + +K+FVGGL+ T+ E + +F
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYF 53
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 425
+F +YGEIE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEK 486
Query: 426 HGK 434
GK
Sbjct: 487 PGK 489
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 425
+F YGE+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGG+S + +R FS++G +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEV 60
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.9 bits (94), Expect = 3e-04
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTIN 389
+F ++G I S V D TGRS+G+ F+ F+ ES IDK+ M + H I
Sbjct: 155 TFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 390 NKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
++ D R ++V L EI +DE+R F +FG I
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Score = 37.1 bits (82), Expect = 0.009
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +3
Query: 267 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT--------INNKKVDPKKAKA 422
+ S+ V D N RS G+A+I F P + M A +T I DP +
Sbjct: 75 VVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS 133
Query: 423 RHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
G IF+ L + I + + FS FGTI
Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTI 162
Score = 30.7 bits (66), Expect = 0.78
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 347
F YG + S V +P G SRGF F+ + PE
Sbjct: 352 FSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 413
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 414 AKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTI 509
K G K+FVG L +S+ E+++ FSE+GTI
Sbjct: 88 VKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTI 126
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 41.5 bits (93), Expect = 4e-04
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 401
+F YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 147 AFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIG 206
Query: 402 ----DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFSEFGTI 509
+P A A+H KI+V +S++I ++ FFS FG I
Sbjct: 207 PVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEI 253
Score = 34.7 bits (76), Expect = 0.048
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +GEIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 44 FEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 34.7 bits (76), Expect = 0.048
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET + LR HF
Sbjct: 25 KVFVGGLAWETQSETLRQHF 44
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E + +R F ++G I
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEI 50
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 34.7 bits (76), Expect = 0.048
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 429 GKIFVGGLSSEISDDEIRNFF 491
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 34.7 bits (76), Expect = 0.048
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 429 GKIFVGGLSSEISDDEIRNFF 491
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---K 398
F +G I S V T + G+SRG+ F+ F+ A ++++ + A + K K
Sbjct: 132 FKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Query: 399 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
D K + ++ +++ L +++S+D +R F+EFG I
Sbjct: 191 TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 393 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+K + +K A+ I+V ++ ++++E+R FS+ GTI
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI 330
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 401
+F + + S+ + D ++GRS + + F + + + + +++ N K+
Sbjct: 43 AFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Query: 402 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
P + G +FV L +++ +++ F +FG I
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNI 138
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 362
G I S + D G+S+GF F+ F P E+ID V
Sbjct: 328 GTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E DE+R +F +FG I
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEI 43
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET E+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E DE+R +F +FG I
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEI 43
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET E+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +GEI V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 401
+F YGEI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 182 AFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 166 EAPGRDDD-RKLFVGGLSWETTDKELRDHF 252
E+ RD R +FV GL W+TT + L+ F
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAF 183
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
F YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 44 FDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 33.9 bits (74), Expect = 0.084
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET + LR HF
Sbjct: 25 KVFVGGLAWETQSETLRRHF 44
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E + +R F ++G I
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDI 50
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 34.3 bits (75), Expect(2) = 0.002
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F + G +E + V D TGRSRGF F+ S+ +V AA + N ++D + +
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNA 166
Query: 429 G 431
G
Sbjct: 167 G 167
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 425
F G++ V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 509 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 604
+E + +D+ + KGF F+T++S Q V + +
Sbjct: 231 VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Score = 23.8 bits (49), Expect(2) = 0.002
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+++VG LS + D + + FSE G +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKV 230
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
+F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 31.1 bits (67), Expect = 0.59
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
K+F+GG++ + +D +R F+++G + R L ++ + R
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSR 81
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRD---HFGHTVK*RVLM*RQ 291
KLF+GGLSW T D LRD HFG V +V++ R+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE 71
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVF 335
+F +G++ V D TGRSRGF F+ F
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+F+GGLS D +R+ F+ FG +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDV 61
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRD---HFGHTVK*RVLM*RQ 291
KLF+GGLSW T D LRD HFG V +V++ R+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE 71
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVF 335
+F +G++ V D TGRSRGF F+ F
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+F+GGLS D +R+ F+ FG +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDV 61
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 440
GEI + + D ++G S+G+AF+ FK + K + K ++F
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
Query: 441 VGGLSSEISDDEIRNFFSEFG 503
+G + ++DE R + G
Sbjct: 200 IGNIPKNWTEDEFRKVIEDVG 220
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 426 HG-KIFVGGLSSEISDDEIRNFFSEFGTI 509
HG ++F+GGL ++ ++++R+ E G I
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEI 142
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 267 IESINVKTDP-NTGRSRGFAFIVF 335
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 42 FEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVGGL+ E D +R +F +FG I
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEI 48
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET +R +F
Sbjct: 23 KIFVGGLAWETQRDTMRRYF 42
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 395
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 166 EAPGRD-DDRKLFVGGLSWETTDKEL 240
EA RD RK+FV GL WETT + L
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETL 120
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 395
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 166 EAPGRD-DDRKLFVGGLSWETTDKEL 240
EA RD RK+FV GL WETT + L
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETL 120
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKA 422
+F YG + V D +GRSRGF FI F +++D+ +AA ++ + + KA+
Sbjct: 26 AFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
Query: 423 RHG 431
G
Sbjct: 86 HQG 88
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHF---GHTVK*RVLM 282
D + + F+GGL+W T+D+ LRD F GH V+ +V++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVL 40
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 422
+F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 423 R 425
R
Sbjct: 87 R 87
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHF 252
D + + FVGGL+W T D+ L F
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAF 28
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 422
+F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 423 R 425
R
Sbjct: 87 R 87
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHF 252
D + + FVGGL+W T D+ L F
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAF 28
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +GEI +NV D T RS+G+ F+ FK ES + TI + + K A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTK 536
IFVGGL S ++D++++ FSEFG I + P+ K
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 426 HGKIFVGGLSSEISDDEIRNFFSEFGTI 509
H K+FVGGL+ E DE+R +F +FG I
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEI 43
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET E+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
+F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 106 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHF 252
N+L+G G S + G R KLFVGGLSW T D L+ F
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAF 55
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGLS D ++ F+ FG +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEV 61
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
+F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 106 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHF 252
N+L+G G S + G R KLFVGGLSW T D L+ F
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAF 55
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGLS D ++ F+ FG +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEV 61
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQ 539
+FVGGL + ++DD ++N FS++G I + P K+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR 297
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQ 539
+FVGGL + ++DD ++N FS++G I + P K+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR 297
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 404
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 405 PKKAKARHGKI 437
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 404
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 405 PKKAKARHGKI 437
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +3
Query: 300 TGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLS 455
T RS G+A++ F PE + M + + I ++ + DP + G +F+ L
Sbjct: 81 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLD 140
Query: 456 SEISDDEIRNFFSEFGTI 509
+ I + + FS FGTI
Sbjct: 141 ASIDNKALYETFSSFGTI 158
Score = 33.1 bits (72), Expect = 0.15
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 24/112 (21%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPE----SIDKV--MAAGEHTI----NNK 395
+F YG+I S V D +G SR F F+ F +PE +++K+ ++ GE + K
Sbjct: 244 TFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 302
Query: 396 KVDPKK--------------AKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
K D ++ K + +++ L ++D++++ FSE+G +
Sbjct: 303 KSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNV 354
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 347
F YG + S V + + G SRGF F+ + PE
Sbjct: 348 FSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTK 536
IFVGGL S ++D++++ F+EFG I + P+ K
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 35.9 bits (79), Expect = 0.021
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +3
Query: 264 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 410
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 411 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 497
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQ 539
IFVGGL + ++DDE+++ F +FG + + P K+
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKR 296
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVF 335
YG ++ V D TGRS+G+ F+ F
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 148 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFG 255
Q+ A A D ++ +FVGGL TD EL+ FG
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.9 bits (79), Expect = 0.021
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +3
Query: 264 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 410
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 411 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 497
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E +RN+F +FG I
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDI 33
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET LR++F
Sbjct: 8 KVFVGGLAWETHKVSLRNYF 27
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E +RN+F +FG I
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDI 33
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET LR++F
Sbjct: 8 KVFVGGLAWETHKVSLRNYF 27
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 434
G++ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 99 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 157 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
+ AE PG L+V GLS T+++L DHF
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHF 95
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/82 (17%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKVDPKKAKARHGKI 437
GE+ + + + ++G +G+AF+ F++ + + + + K++ +A+H ++
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH-RL 174
Query: 438 FVGGLSSEISDDEIRNFFSEFG 503
F+G + + +I+ + G
Sbjct: 175 FLGNVPRNWMESDIKKAANRIG 196
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
+F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 53 AFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 222 FSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 31.5 bits (68), Expect = 0.45
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-------GEHTINNKKVDP 407
F +G I S V + G+S+GF F+ F +S +A G+ K ++
Sbjct: 132 FCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINK 189
Query: 408 KKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTI 509
+ A G ++V L ++DD + FS++GT+
Sbjct: 190 DERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF 335
F YG+I S V N GRS+GF F+ F
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.1 bits (77), Expect = 0.036
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 369 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTK 536
AG H N D ++ + IFVGGL ++++++++ FS+FG + + P+ K
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVF 335
Y ++ V D NTGRS+G+ F+ F
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.048
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 420 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTI 509
A+ G +IFVGGLS E++D ++ FS FG I
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDI 33
Score = 34.3 bits (75), Expect = 0.064
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDP 407
+F +G+I + + +TGRSRGF FI F ++D+ + G+ I+ + +P
Sbjct: 26 AFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEP 85
Query: 408 K 410
K
Sbjct: 86 K 86
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.048
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 413
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 414 AKARHG----------------KIFVGGLSSEISDDEIRNFFSEFGTI 509
K G K+FVG L +S+ E+++ FSE+GTI
Sbjct: 88 VKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTI 135
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.7 bits (76), Expect = 0.048
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH--------- 380
F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187
Query: 381 ---TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
T N +V PKK +++H K++VG L D +RN FS+FGTI
Sbjct: 188 NPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTI 238
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
F +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 232 FSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDH---FGHTVK*RVL 279
+ K++VG L W T LR+H FG V RVL
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVL 244
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.3 bits (75), Expect = 0.064
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF 335
F A+G +E + + DP TG+ +GF FI F
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 34.3 bits (75), Expect = 0.064
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+ FVGGL+ +D++++ FS+FG +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDV 32
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
+ FVGGL+W T D++L+ F
Sbjct: 7 RCFVGGLAWATNDEDLQRTF 26
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 34.3 bits (75), Expect = 0.064
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+ FVGGL+ +D++++ FS+FG +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDV 32
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
+ FVGGL+W T D++L+ F
Sbjct: 7 RCFVGGLAWATNDEDLQRTF 26
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 34.3 bits (75), Expect = 0.064
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+ FVGGL+ +D++++ FS+FG +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDV 32
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
+ FVGGL+W T D++L+ F
Sbjct: 7 RCFVGGLAWATNDEDLQRTF 26
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.3 bits (75), Expect = 0.064
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKA 341
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.3 bits (75), Expect = 0.064
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKA 341
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.3 bits (75), Expect = 0.064
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 416
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKA 341
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 34.3 bits (75), Expect = 0.064
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 142 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR---DHFGHTVK*RVLM 282
DS+D + +E+P +KLF+ GLS+ T++K LR + FG V+ +++M
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIM 315
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 350
+F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 301 AFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 34.3 bits (75), Expect = 0.064
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F GE+ + + +P T +S+G AF+ F E + + + + N K A +
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDN 293
Query: 429 GKIFVGGLSSEISDDEIRNFFSEFG 503
+FVG + + + +R +G
Sbjct: 294 DTLFVGNICKIWTPEALREKLKHYG 318
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.084
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 416
G++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 201 GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
+G +E + V D +GRSR F F K+ E + V+
Sbjct: 99 HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.9 bits (74), Expect = 0.084
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVF 335
+F ++GE+ + + D +GRSRGF F+ F
Sbjct: 60 AFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
K+F+GGLS + + +++ FS FG + + R K + R
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSR 82
Score = 31.1 bits (67), Expect = 0.59
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
KLF+GGLSW ++ L+D F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAF 61
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.084
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 33.9 bits (74), Expect = 0.084
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 413
+F YG I S V D + G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 244 TFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Frame = +3
Query: 264 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAK 419
++ S+ V D T S G+ ++ + + +K M ++ N K+ D +
Sbjct: 71 QVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARR 130
Query: 420 ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ G +FV L + + + FS GTI
Sbjct: 131 SGVGNLFVKNLDKSVDNKTLHEAFSGCGTI 160
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.084
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 255 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.9 bits (74), Expect = 0.084
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 422
+F YG+I + +TGR RGF FI F D + + NK + KA+
Sbjct: 31 TFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEP 90
Query: 423 RHG 431
+ G
Sbjct: 91 KVG 93
Score = 31.1 bits (67), Expect = 0.59
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHF 252
+ ++FVGGLSW+ T+++L F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTF 32
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+IFVGGLS ++++ ++ + F +G I
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.9 bits (74), Expect = 0.084
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 422
+F YG+I + +TGR RGF FI F D + + NK + KA+
Sbjct: 31 TFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEP 90
Query: 423 RHG 431
+ G
Sbjct: 91 KVG 93
Score = 31.1 bits (67), Expect = 0.59
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 187 DRKLFVGGLSWETTDKELRDHF 252
+ ++FVGGLSW+ T+++L F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTF 32
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+IFVGGLS ++++ ++ + F +G I
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKI 38
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 402 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+P++ + GKIFVG L + I E FF +FG I
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPI 191
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKV 401
F +G + + + D TG+ +G F+ + + D+ + A G + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199
Query: 402 DPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
D ++ + K+FVG L+ + ++ E+ F +FG +
Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKV 401
F +G + + + D TG+ +G F+ + + D+ + A G + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199
Query: 402 DPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
D ++ + K+FVG L+ + ++ E+ F +FG +
Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 297 NTGRSRGFAFIVFKAPESIDKVMA 368
NTGRSRGF FI F++ E++ +A
Sbjct: 255 NTGRSRGFGFISFESAENVQSALA 278
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 345 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
E +++ GE + +K +A G+++VG L I+ E+ F E GT+
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTV 142
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 428
F G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 429 GKIFVGGLSSEISDDEIRN 485
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFG 255
D K++ G L W T + L+D FG
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFG 240
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 246 SFWAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 395
+F A+G I S + DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 131 TFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
Score = 32.3 bits (70), Expect = 0.26
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAK 419
G + ++ V D T + + FI +++ E D KV+ G+ NK KK+
Sbjct: 49 GPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSL 108
Query: 420 ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+F+G L ++ + + + FS FG I
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 353
F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELR---DHFGHTVK*RVLM*RQ 291
D++ + FVGGL+W T ++ + + FG ++++ R+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRE 80
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI*KWRCPL 530
K++VGG+ + ++DEIR++F G I K C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHFGHTV 264
D ++++G L+W+TT++++R F V
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDCV 286
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
KL+VGG+ +++T+ E+R +F
Sbjct: 162 KLYVGGIPYQSTEDEIRSYF 181
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.5 bits (68), Expect = 0.45
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET + ++ HF
Sbjct: 14 KVFVGGLAWETHKETMKKHF 33
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E + ++ F +FG I
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEI 39
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.5 bits (68), Expect = 0.45
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET + ++ HF
Sbjct: 14 KVFVGGLAWETHKETMKKHF 33
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E + ++ F +FG I
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEI 39
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.5 bits (68), Expect = 0.45
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+WET + ++ HF
Sbjct: 14 KVFVGGLAWETHKETMKKHF 33
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVGGL+ E + ++ F +FG I
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEI 39
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 31.5 bits (68), Expect = 0.45
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKARHG-- 431
G +E V + +T +SRGF F+ E +K V +N +++ +A R
Sbjct: 137 GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRP 196
Query: 432 -----------KIFVGGLSSEISDDEIRNFFSEFGTI 509
+I+VG L ++ + FSE G +
Sbjct: 197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 152 FSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
Score = 31.1 bits (67), Expect = 0.59
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGEHTINNKK-------- 398
+F YG+I S V D G+S+GF F+ F+ A ++ V + H ++K+
Sbjct: 48 AFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 106
Query: 399 -------------VDPKKA--KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
+ K+A K + ++V L ISD++++ FS FGT+
Sbjct: 107 KSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTV 158
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 354 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
DK + G + ++ D K + ++V L+ +DD+++N F E+G I
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 55
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFI 329
GE+ ++V TD TG SRGFA+I
Sbjct: 507 GEVTRVHVPTDRETGASRGFAYI 529
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 336 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
K ++ V A + K + + +F G LS +I+ +I NFF E G +
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEV 410
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFK 338
SF A+ V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFK 338
+F +G++ + D +GRSRGF F+ FK
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+ FVGGL+ +D++++ FS+FG +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDV 32
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
+ FVGGL+W T D++L+ F
Sbjct: 7 RCFVGGLAWATNDEDLQRTF 26
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHGK- 434
G +E V + T +SRGF F+ + + + + + +N + + KA R +
Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRP 233
Query: 435 ------------IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
++VG L ++ + + FSE G + + R ++ + R
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSR 285
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHTINNKKVD 404
F +G ++ + V + TG+S+ F FI F+ PE + +AAG EH + ++
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIE 137
Query: 405 PKKAK 419
P+ K
Sbjct: 138 PENVK 142
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKER 554
+++G + + EI FFS+FGT+ + R K+ K +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.45
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVGGL+W+T + + DHF
Sbjct: 18 KVFVGGLAWDTHKEAMYDHF 37
Score = 30.7 bits (66), Expect = 0.78
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
F YG+I + +D T RS+G+ F+ FK ++ + IN ++ +
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRAN 88
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 380
+G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 321 WGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Score = 31.1 bits (67), Expect = 0.59
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAK 419
F + I+ + + D T SRGFAF+ F + E K + A T N K + AK
Sbjct: 478 FSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
Query: 420 ARHG 431
+ HG
Sbjct: 538 SVHG 541
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 356
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 425
G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Frame = +1
Query: 118 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF---GHTVK* 270
G+ +GGG S S G +L+VG LSW D L + F G V+
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 271 RVL 279
RV+
Sbjct: 279 RVI 281
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 356
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 425
G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Frame = +1
Query: 118 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF---GHTVK* 270
G+ +GGG S S G +L+VG LSW D L + F G V+
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 271 RVL 279
RV+
Sbjct: 287 RVI 289
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 404
+F ++G+I V D +G SRGF F+ + + E + M A + NK++D
Sbjct: 55 AFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKELD 103
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
+F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 50 AFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 267 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 419
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.1 bits (67), Expect = 0.59
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 24/118 (20%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN---------NKK-- 398
Y ++ V D TGRS+G+ F+ F + M G++ + NKK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 399 -VDPKKAKARHGK----------IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQ 539
+ P + G IFVG + +++D++++ F +FG + + P K+
Sbjct: 257 TMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR 314
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 434
G ++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 675 GGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 434
G ++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 675 GGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
+F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 40 AFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 509 LEVEMPFDKTKNQRKGFCFITFESEQ 586
L+V++ DK + + KGF ++TF S++
Sbjct: 48 LKVDVIMDKIRCRPKGFAYVTFSSKE 73
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 386
F ++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 258 FSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
+F +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 114 AFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 261 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 401
G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 69 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 157 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
+ AE PG L+V GLS T+++L DHF
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHF 65
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPK 410
+F YG + V D T RSRGF F+ + + + ++ + +N ++V K
Sbjct: 22 AFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+++VG LS +DD +R FS +G +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNV 29
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFK 338
SF + V D TGRSRGF F+ F+
Sbjct: 163 SFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 30.7 bits (66), Expect = 0.78
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Frame = +3
Query: 270 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 419
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 420 --ARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
K+FVG LS ++ + + F E G +
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECGDV 203
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
+F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 196 AFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 181 DDDRKLFVGGLSWETTDKELRDHF 252
+ + KLFVG LSW T + L F
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAF 197
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 30.7 bits (66), Expect = 0.78
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF 335
F + GEI++++V D +TG S+G A++ F
Sbjct: 425 FSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 109 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
++ AE G SQD + SA D R ++VG + + T +E++ HF
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 123
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F +G + + V D TG SRGF F+ F + E + +
Sbjct: 233 FHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
KIFVG L+ + D++R +F +FG +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQV 38
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
K+FVG L+W TT +LR +F
Sbjct: 13 KIFVGNLTWRTTADDLRRYF 32
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +3
Query: 315 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 494
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 495 EFGTI 509
+FG +
Sbjct: 99 QFGNL 103
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF 252
KL+V GLS+ TT+ LRD F
Sbjct: 78 KLYVSGLSFRTTEDTLRDTF 97
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 372 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
GE NN + + + + VG +SS + D E++ F +FG I
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDI 243
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
F +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 536 FNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 392
F +G++ + V D +T +SRG AF+++ + E K + + I N
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILN 124
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 115 NGNAENGG--GDSQDHNSAEAPGRDDDR 192
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 371
F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 581 FTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA 422
+F G + + T+ + RGFAF+ F E +++ + T+ +++ K+A
Sbjct: 39 AFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAH 98
Query: 423 R 425
R
Sbjct: 99 R 99
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 347
F A+GEI + + D RS+G+AFI F + +
Sbjct: 60 FSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 73 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 192
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 70 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 162
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFK 338
F Y V D TGRSRGF F+ F+
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 368
+F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF 335
F +YG I+ +++ TD T + +G+AFI +
Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 115 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 246
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
G + + + E+P R L+VGGL+ ++++RD F
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQF 248
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKE 551
+FV G S +S+ ++ FSEFG + + + +RT++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKI-IANERTRQ 97
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWRCPLTKQRTKE 551
+FV G S +S+ ++ FSEFG + + + +RT++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKI-IANERTRQ 116
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 SFWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA 422
+F G++ + D + RS+GF F+ F + + K +M +N + + AKA
Sbjct: 53 AFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKA 112
Query: 423 R 425
+
Sbjct: 113 K 113
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +1
Query: 193 KLFVGGLSWETTDKELRDHF---GHTVK*RVLM*R 288
KLF+GGLS+ TT++ L + F G V+ +++M R
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDR 69
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 115 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHF 252
+G+A GD + ++A D D +LFV L + T++EL +HF
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHF 281
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F +G+I+ + D T R +GF FI F + + K +
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI 509
+++VG L +S+D++R F FG++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV 311
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 438 FVGGLSSEISDDEIRNFFSEFGTI 509
+VG L S+ +++++N FS+FG +
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDV 34
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
G + + + E+P + + L+VGGL+ ++++RD F
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQF 248
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI 509
+FV G S +S+ ++ FSEFG +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQV 84
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 365
F +G + +V D T SRGF F+ F + E + +
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 435 IFVGGLSSEISDDEIRNFFSEFGTI*KWR 521
++VGG+ +S D++ FS+FG I +R
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFR 280
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 365
F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 402 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 509
DP + G +FV L I + ++ + FS FG +
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKV 57
Score = 27.9 bits (59), Expect = 5.5
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-------------DKVMAAGEHTIN 389
F +GEI S V D G+SR F F+ F+ E+ +K + G
Sbjct: 139 FGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK 197
Query: 390 NKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEIRNFFSEFGTI 509
+ + KAK R G ++V L + + ++ FSEFGTI
Sbjct: 198 TNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTI 249
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 249
T NG GGG + + P R + ++ V GL + ++L+DH
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDH 138
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 249
T NG GGG + + P R + ++ V GL + ++L+DH
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDH 138
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 100 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 249
T NG GGG + + P R + ++ V GL + ++L+DH
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDH 138
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 67 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 198
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 255 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 255 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 255 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 371
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 425
F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K +
Sbjct: 176 FSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEK 231
Query: 426 HGKI 437
GK+
Sbjct: 232 -GKV 234
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 303 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 401
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 139 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 252
G S+ + + + L+V GLS TDK+L HF
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHF 92
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 425
F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K +
Sbjct: 279 FSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEK 334
Query: 426 HGKI 437
GK+
Sbjct: 335 -GKV 337
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 432 KIFVGGLSSEISDDEIRNFFSEFGTI*KWR 521
KIF+GG S IS + + S FG + +R
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYR 70
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 282 VKTDPNTGRSRGFAFIVFK 338
V D TGRSRGF F+ F+
Sbjct: 183 VMWDQKTGRSRGFGFVSFR 201
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -3
Query: 406 GSTFLLLM----VCSPAAMTLSIDSGALNTMKA 320
G++ LL++ +CS +A+T +D+ ALN +K+
Sbjct: 6 GASLLLILFFFQICSVSALTNGLDASALNALKS 38
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 249 FWAYGEIESINVKTDPNTGRSRGFAFIVF 335
F +G + + + D +G+ RGFAF+ F
Sbjct: 67 FERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 258 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 386
YG I+++ + TG SRG+ F+ ++ + + + H++
Sbjct: 87 YGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSL 129
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = -2
Query: 209 PPTKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 90
PP S LS S P +L S PPP S+ PLS LS +S
Sbjct: 49 PP--SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLS 86
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 112 LNGNAENGGGDSQDHN-SAEAPGRDD 186
+NGN+ NG D +DHN E G D
Sbjct: 113 INGNSNNGFWDQRDHNKKPERNGESD 138
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 145 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 249
S ++++ AP R D ++ V GL + ++L+DH
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDH 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,510
Number of Sequences: 28952
Number of extensions: 278303
Number of successful extensions: 1488
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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