Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20559
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    38   0.001
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    34   0.017
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.6  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    27   2.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.6  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   4.6  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   6.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    25   8.1  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   8.1  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/71 (29%), Positives = 41/71 (57%)
 Frame = +1

Query: 265 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 444
           +A+V Q+ S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+
Sbjct: 90  KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149

Query: 445 LVTERITLADV 477
           LV  R+TLAD+
Sbjct: 150 LVGSRLTLADI 160



 Score = 31.9 bits (69), Expect = 0.093
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 119 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 235
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +1

Query: 265 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 438
           +A + +W  + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  R
Sbjct: 93  EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152

Query: 439 TFLVTERITLADVIVFSTLLHAF 507
           T+LV +R TLAD + F +LL  F
Sbjct: 153 TYLVGDRFTLAD-LFFGSLLRIF 174



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +2

Query: 8   GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 187
           G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  ADG
Sbjct: 4   GTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADG 60

Query: 188 KVLLTESNAIAYY 226
              L+E  AI  Y
Sbjct: 61  -FELSEVIAIVKY 72


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 392 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 484
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +2

Query: 434 HAPSLLPRESHLPMSLSSVHCCM-LSARARPER----PFVADKRSALVPDRRPP 580
           H PS  PRE ++  SL  V   + LS    P+R     F   KR A     RPP
Sbjct: 391 HIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPP 444


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 26  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 205
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 206 SN 211
           SN
Sbjct: 612 SN 613


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 402 RLKSTGRTSSHTHLPCYRENHTCRCHCLQYTAACFPHVLDPSVRSSLIN-VQR 557
           RLKST  TS  T+   +  +   RC  ++   A  P  +   + S+  N VQR
Sbjct: 15  RLKSTSATSPITYKALHANSPLPRCRIIEPPRATVPEAVSNIIMSTPFNRVQR 67


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 VWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 349
           +W+P PV  SG    T+  C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 195 STFPSALSNAGTFPAGNFFKKSSDL 121
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 302 VNYCLLPVLGSSLTLVSCNSTNRML 376
           V + L+P LG  L + SCN+  R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 257 WLPKPVSGSGHHGLTVNYCLLPV 325
           +LP  +SG G+  L+V Y  +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/74 (22%), Positives = 29/74 (39%)
 Frame = +2

Query: 107 FGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGVWLPKPVSGSG 286
           FG + K     +    G    F   D ++L      +  ++   S+ GG+ L   +SG+ 
Sbjct: 55  FGHSRKGGPKKQGCTGGWSLVFPDLDYQILRASDTELPLFLWGHSMGGGLALRYGISGTH 114

Query: 287 HHGLTVNYCLLPVL 328
            H L       P+L
Sbjct: 115 RHKLAGVIAQAPML 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,824
Number of Sequences: 5004
Number of extensions: 64851
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)