Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20559
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 79 3e-15
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 71 7e-13
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 41 0.001
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 40 0.003
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 39 0.005
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 38 0.010
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 36 0.024
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 36 0.032
02_05_1202 + 34932291-34933027,34933297-34933774 35 0.055
03_01_0249 - 1935355-1935827,1936129-1936330 33 0.30
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 32 0.39
11_06_0584 - 25220371-25222917 31 1.2
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 30 1.6
06_01_0611 + 4420873-4422207 30 2.1
10_08_0494 - 18308105-18309490 29 2.8
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609... 29 2.8
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 29 2.8
02_05_0565 + 30010395-30010485,30011604-30011678,30011913-300121... 29 3.6
01_01_0735 + 5730783-5733320 29 3.6
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 4.8
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 4.8
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 29 4.8
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 8.4
02_04_0470 - 23183925-23184743,23184929-23185153 28 8.4
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 28 8.4
01_02_0078 - 10894871-10895841,10897268-10898426 28 8.4
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 79.4 bits (187), Expect = 3e-15
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +2
Query: 11 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 190
VL+T+ N A+KALIAA+YSG V++A NF G +NK+ ++LK P GKVP E+ DG
Sbjct: 565 VLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGP 624
Query: 191 VLLTESNAIAYYVANES 241
V ESNAIA YV + S
Sbjct: 625 VF--ESNAIARYVLSSS 639
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +2
Query: 11 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 190
VL+ N A+KALIAA+YSG V++ NF G +NK+ +FLK P GK+P E+ DG
Sbjct: 4 VLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGP 63
Query: 191 VLLTESNAIAYYV 229
V ESNAIA YV
Sbjct: 64 VF--ESNAIARYV 74
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +1
Query: 253 SLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLL 432
SL A + QW +S +E+ + W+FP LG + + E A + L +L L+ HL
Sbjct: 657 SLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLA 716
Query: 433 TRTFLVTERITLADVIVFSTLLHAF 507
+ T+LV +TLAD+++ L F
Sbjct: 717 SNTYLVGHSVTLADIVMTCNLYMGF 741
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/92 (31%), Positives = 48/92 (52%)
Frame = +1
Query: 253 SLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLL 432
SL A + QW +S +E+ W++P LGI + + E A + L +L L+ HL
Sbjct: 96 SLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLA 155
Query: 433 TRTFLVTERITLADVIVFSTLLHAFRTC*TRA 528
+ T+LV +TLAD+++ L F T++
Sbjct: 156 SNTYLVGHSVTLADIVMTCNLYMGFARIMTKS 187
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 408 KSTGRTSSHTHLPCYRENHTCRCHCLQYTAAC---FPHVLDPSVRSSLINVQRWFLTVAH 578
+S G ++H Y H+ + T F ++ S S +V+R+F T+ +
Sbjct: 145 RSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVN 204
Query: 579 QPQVSAVVGSLTLCAAPPTYDPK 647
QP V+G + + P K
Sbjct: 205 QPNFKKVLGDVKQAESVPPVQKK 227
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 408 KSTGRTSSHTHLPCYRENHTCRCHCLQYTAAC---FPHVLDPSVRSSLINVQRWFLTVAH 578
+S G ++H Y H+ + T F ++ + S +V+R+F T+ +
Sbjct: 706 RSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVN 765
Query: 579 QPQVSAVVGSLTLCAAPPTYDPK 647
QP V+G + + P K
Sbjct: 766 QPNFKKVMGDVKQADSVPQVQKK 788
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 71.3 bits (167), Expect = 7e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +2
Query: 11 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 190
VL+ N A+KALIAA+Y+G V++ NF G +NK+ +FLK P GK+P E+ +G
Sbjct: 28 VLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGA 87
Query: 191 VLLTESNAIAYYVA 232
V ESNAIA YVA
Sbjct: 88 VF--ESNAIARYVA 99
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +1
Query: 253 SLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLL 432
SL + + QW +S +E+ W++P LG + E A + L +L L+ HL
Sbjct: 111 SLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLA 170
Query: 433 TRTFLVTERITLADVIVFSTLLHAF 507
+ T+LV +TLAD+++ L + F
Sbjct: 171 SNTYLVGHSVTLADIVMTCNLYYGF 195
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Frame = +3
Query: 396 TGRLKSTGRTSSHTHLPCYRENHTCRCHCLQYTAAC---FPHVLDPSVRSSLINVQRWFL 566
T +S G ++H Y H+ + T F +L S S +V+R+F
Sbjct: 156 TSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFW 215
Query: 567 TVAHQPQVSAVVGSLTLCAAPPTYDPK 647
T+ +QP V+G + P K
Sbjct: 216 TMVNQPNFKKVIGDFKQAESVPPVQKK 242
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 53 LIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 229
L+ + +G + VA + GE N+S L + P GK+PAFE DG+V L ES AI YV
Sbjct: 18 LVCLEEAGASYELVAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYV 74
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 KALIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 223
+ L+ + G D + V +F+ GE N S + +++ P GK+PA + DG ++L ES AIA
Sbjct: 17 RVLVCLEEVGADYELVTVDFLAGEQN-SPEHVERNPFGKIPALQ--DGDLVLFESRAIAK 73
Query: 224 YV 229
Y+
Sbjct: 74 YI 75
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +1
Query: 388 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 495
S+ AA LDG+L +RTFLV+ +++AD++V+S L
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNL 128
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 KALIAAQYSGTDVKVAPNFVFGET-NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 223
+ L+ + G D ++ + FG+ +K D L + P G+VPAF+ DG ++L ES AI
Sbjct: 17 RVLLCLEEVGADYEIV-DVDFGDREHKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICR 73
Query: 224 YV 229
Y+
Sbjct: 74 YI 75
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 388 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 495
S+ A +DG+L++RTFLV +T+AD+ V+S L
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNL 126
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 47 KALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 226
+ L+ + G + +V P + +K + + P G+VPAFE DG + L ES AI+ Y
Sbjct: 17 RILVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFE--DGDLTLFESRAISKY 74
Query: 227 V 229
+
Sbjct: 75 I 75
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 361 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 498
+++ + A +L AAL L+ HL +L + +TLADV +F+TL+
Sbjct: 252 SQEAYDAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLV 297
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 119 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGG 253
+KS FLK P G+VPAF+ D + ES AI Y+ ++ G
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQYADSG 84
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 14 LYTYPENFRAYKALIAAQYSGTDVKV-APNFVFGETNKSEDFLKKFPAGKVPAFESADGK 190
LY+Y + +++ IA G + + A N + GE + E F+K P VPA DG
Sbjct: 16 LYSYWRSSCSHRVRIALNLKGLEYEYKAVNLLKGEHSDPE-FMKVNPMKFVPAL--VDGD 72
Query: 191 VLLTESNAIAYYVANE 238
++ +S AIA Y+ ++
Sbjct: 73 AVIGDSYAIALYLEDK 88
>11_06_0584 - 25220371-25222917
Length = 848
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 458 LSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 294
+++ + R R P + R + +ST C C +PR K +AG S+++D
Sbjct: 386 INIRKTARRRELPQKQHQHKLR--WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 376 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAFR 510
E AK++LL L+ L+G L R+F + D+++ FS++ H ++
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYK 156
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 533 FVADKRSAL-----VPDRRPPATSVGRRRLAHALC 622
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>10_08_0494 - 18308105-18309490
Length = 461
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 379 RAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFRTC 516
R D+L L + +LT ++ E +T D+IV++ L+H F TC
Sbjct: 406 RTVIDVLCKLGRVYDAVLTLKQMINEGLT-PDIIVYTPLIHGFCTC 450
>07_01_0785 +
6095041-6095135,6095455-6095760,6098458-6098554,
6098943-6098999,6099202-6099751,6099922-6100234,
6100245-6100335,6101002-6101469
Length = 658
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 624 PHRA*ASRRRPTLVAGGRRSGTNAERLSATNGRSGLARAESMQQCTEDND 475
P A A RRR A + T AE +S++NGR+G AE +Q ++D
Sbjct: 541 PSAAAAGRRRKRSAAAA--TATAAEGMSSSNGRNGGEAAEVVQVSIIESD 588
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +2
Query: 506 SARAR-PERPFVADKRSA---LVPDRRPPATSVGRRR 604
S+RAR P PF + RS+ PDRRPP T R R
Sbjct: 27 SSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSR 63
>02_05_0565 +
30010395-30010485,30011604-30011678,30011913-30012138,
30014432-30014649,30015170-30015303,30015424-30015675,
30016009-30016416
Length = 467
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 524 RV*HVRKACSSVLKTMTSASVILSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNC 354
+V V +A + ASV+L + +R S T + ASR+ A +TF L C
Sbjct: 223 KVWRVSQAIGDIAFAYPFASVLLEIEDTLRSPPPESETMRTASRASIAVTTFFYLCC 279
>01_01_0735 + 5730783-5733320
Length = 845
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 94 TEFRIWRDQQVRRLLEEVSCRKSACIRKCRWKSA 195
T F +W D + + +E SC+K C+ C K+A
Sbjct: 372 TYFHLWGDSRGAPMTDEESCKKD-CLSNCSCKAA 404
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 431 SHAPSLLPRESHLPMSLSS 487
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 134 FLKKFPAGKVPAFESADGK 190
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -2
Query: 494 SVLKTMTSASVILSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEA 315
S + M +A V + +K RVR PSST ++A+RS C + + + A+
Sbjct: 410 SAVDRMVNA-VKVEPKKKARVRPSPSSTLRSANRSTAGTLVVCPASVLRQWASELAAKVT 468
Query: 314 GSSSLS 297
SS LS
Sbjct: 469 ESSKLS 474
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 380 RSTFCLLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRAWV 261
R T C NC+I + T Q + + C+T WV
Sbjct: 470 RKTICRTNCLICKGTSTSEQNSEDENPDSSRTACETPKWV 509
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +2
Query: 446 LLPRESHLPMSLSSVHCCMLSARARPERPFVADKRSALVPDRRPPATSVGRRR 604
L+P + P+S HCC + E VPD RPP RR
Sbjct: 220 LVPPPAASPLSNRQRHCCRAAIAGALESATGRPDPGTAVPDPRPPPPPPKARR 272
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Frame = +1
Query: 259 ATQARVWQWASWSDSELLPASCAWVF-----PYLGIMQFNKQNVERAKSDLLAALKVLDG 423
A+ A++ W PA VF P LG + V+ + L L V D
Sbjct: 95 ASPAKLEVWLEVESHHFYPAISGLVFQLLIKPLLGGAT-DTAAVDEHAAALAQVLDVYDA 153
Query: 424 HLLTRTFLVTERITLADVIVFSTLLHAFRT 513
HL +L R +LAD S LL +T
Sbjct: 154 HLAGSRYLAGNRFSLADANHMSYLLFLSKT 183
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 223 LRCQ*KSPRRSLATQARVW 279
L C+ K+PRRS A ARVW
Sbjct: 394 LACRLKTPRRSRAELARVW 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,368,538
Number of Sequences: 37544
Number of extensions: 493123
Number of successful extensions: 1515
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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