Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20559
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 85   7e-17
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.92 
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.2  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        31   1.2  
SB_55749| Best HMM Match : SRCR (HMM E-Value=0)                        30   2.1  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)                 29   4.9  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   4.9  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  28   6.5  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   8.6  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   8.6  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 28   8.6  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 41/76 (53%), Positives = 51/76 (67%)
 Frame = +2

Query: 2   AAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESA 181
           AAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+ 
Sbjct: 2   AAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETK 60

Query: 182 DGKVLLTESNAIAYYV 229
                      +  YV
Sbjct: 61  TANACTRAMPLLTTYV 76



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/71 (45%), Positives = 50/71 (70%)
 Frame = +1

Query: 283 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 462
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 463 TLADVIVFSTL 495
           TLAD+ V   L
Sbjct: 135 TLADIAVCCVL 145


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
 Frame = +2

Query: 92   APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLRG 250
            +PN +F      + +E +L  F +G   + E   SA+G++  L     +A  ++++  R 
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857

Query: 251  GVWLPKPVSGSGHHGLTVN 307
            G+W P+PVSG     L ++
Sbjct: 1858 GLWKPEPVSGEAFSSLPLS 1876


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 365 LLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRAWVARLLRGDFHWQRSKRWHCFQLGALF 186
           LL  M  R  +  AQ AG  S+ D    C     + R++ GD+HWQ +K +      A F
Sbjct: 108 LLKRMRKRARELAAQGAGEESVFDR-IRCVA---LTRIVYGDYHWQLAKAYSKLAY-AYF 162

Query: 185 H-RHFRMQALFRQETSSRSL 129
           H R    QAL   E +  +L
Sbjct: 163 HLRGLAPQALKHAENARDTL 182


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 32  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 211
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 212 AIAYYVANESL 244
            I   + N+SL
Sbjct: 165 IIVNDIENDSL 175


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 426 SSHTHLPC--YRENHTCRCHCLQYTAACFPH 512
           S +T  PC  Y+   TC C C+ YT    PH
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYTPFPCPH 903


>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1224

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 628 GAAQSVSEPTTADTCGWWATVRNQR*TFISDERTLGSSTC-GKHAA 494
           GA Q+   P   DT G+W    N + T +S+     SS C G HAA
Sbjct: 563 GALQAFKTPYNTDTGGFWIDRMNCQGTQVSECSFTKSSECSGLHAA 608


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 331 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 474
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 213 PSLTTLPMKVSAEESGYPSPCLAVGIMV*Q*TTACFLCLGLPLPWYHAIQQTEC*TC 383
           PS+TT    +++E  G P P +  G  +    T C L   L   W  A+    C  C
Sbjct: 109 PSMTTTYGGITSEARGIPEPIVTTGSAMNDSVTGCSL---LHQMWKKAVSDNFCALC 162


>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 582 AGGRRSGTNAERLSATNGRSGLARAESMQQCTEDNDI 472
           A GR  G N ERL    GRS   +AE   +  +DND+
Sbjct: 48  ADGRGCGQNDERLGEKRGRS-CFKAEEHFETDKDNDV 83


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 161 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 42
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 264  PSPCLAVGIMV*Q*TTACFLCLGLPLPWYHAIQQ 365
            PSPC A+     + +T   +C  LP PWY AI Q
Sbjct: 1054 PSPCYAM-----RQSTKPVVCGNLPSPWYAAIYQ 1082


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 238 KSPRRS--LATQARVWQWASWSDSELLPASCA 327
           +SP +S  L T A+V+ WA W   ++   SCA
Sbjct: 71  ESPTKSPDLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 238 KSPRRS--LATQARVWQWASWSDSELLPASCA 327
           +SP +S  L T A+V+ WA W   ++   SCA
Sbjct: 71  ESPTKSPDLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 349 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 483
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 576 GRRSGTNAERLSATNGRSGLARAESMQQC-TEDNDIGKCDSLGNKEGACE 430
           G+      +    T G+ G  R      C +E+++ G+CDS  ++EG C+
Sbjct: 260 GKDGSPGLKGTRGTRGKRG-ERGRKGDMCDSEESEEGECDSEESEEGECD 308


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 367 QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 495
           ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +++
Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSI 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,912,494
Number of Sequences: 59808
Number of extensions: 542787
Number of successful extensions: 1493
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)