Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20557
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   131   1e-31
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    29   0.66 
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    29   0.66 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.66 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    27   2.7  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.7  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    26   6.1  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   8.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   8.1  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  131 bits (316), Expect = 1e-31
 Identities = 57/87 (65%), Positives = 71/87 (81%)
 Frame = +2

Query: 248 LVRSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDE 427
           ++   DHAS+RRG++VY++VC ACHSL  IA+R+LV VTHT DEAK  A+EV  +DGPD+
Sbjct: 82  VLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMASEVEYEDGPDD 141

Query: 428 EGNYFERPGKLSDYLPSPYPNENAARA 508
           EGN F+RPGKLSD+LP PYPN  AARA
Sbjct: 142 EGNMFKRPGKLSDFLPPPYPNVEAARA 168



 Score =  103 bits (247), Expect = 3e-23
 Identities = 44/76 (57%), Positives = 57/76 (75%)
 Frame = +1

Query: 484 PQ*KCGSCSNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPG 663
           P  +    SNNGA PPDLS +  GR GG+DYI++LLTGY EPPAGV + +G N+NP+FPG
Sbjct: 161 PNVEAARASNNGAAPPDLSCVVRGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFFPG 220

Query: 664 GAISMAQVLFDEAAEY 711
             I+MA+ LFD+A E+
Sbjct: 221 TQIAMARPLFDDAVEF 236


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 556 RKGGEDY-IFALLTGYMEPPAGVVLREGQNYNPYF 657
           R  G  Y + A L   + PP G ++R   +Y PYF
Sbjct: 197 RNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYF 231


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -3

Query: 655 SMDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLSTSRIFIGVWR 476
           S D +SV   +LH++ +  N S  R+ + R+PY    SE S + K H    +R+ IG   
Sbjct: 103 SFDHASV--TSLHRRSLSSNTSTPRKYHSRKPY----SEPSVIDKEHL--QNRVSIGTTH 154

Query: 475 RQ 470
            Q
Sbjct: 155 TQ 156


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 162 QHLHLPLPKWTATLFCFLSILECWWTADKPEA 67
           +H ++PLPK  A +FC    L C++T    E+
Sbjct: 822 KHQNIPLPKTCAAIFCGNDELVCFFTIKADES 853


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 695 SNRTCAIEMAPPGKYGL*FCPSRSTTPAGGSM*PVSSAKM*SSPPLRPEQIRDKS 531
           SN   +I + P G+      P RS    G    P+SS++  S+PP  P  I  +S
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 586 LLTGYMEPPAGVVLREGQNYNPYFPGGAIS 675
           LL G  E P    +REGQ Y  Y   G+I+
Sbjct: 395 LLAGTTESPGEYYVREGQRYKSYRGMGSIA 424


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 38  TSFEKIWSSLASGLSAV 88
           +SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 613 QEVPCNQSVARRCNLRRPY 557
           +E+PC Q V R C+L++ Y
Sbjct: 103 EEMPCEQLVRRVCDLKQGY 121


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 7   WRPPSVGFVGHVF*KNM 57
           W+ PS+GFV  +F  N+
Sbjct: 61  WKSPSIGFVNRIFHPNI 77


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 227  QPLESQWLVRSLDHASVRRGYEVYKQVCKAC 319
            Q ++ QW+  +   A + R + VYK  C +C
Sbjct: 1752 QAVKKQWVDSTDISAQLERFFRVYKDECLSC 1782


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 227  QPLESQWLVRSLDHASVRRGYEVYKQVCKAC 319
            Q ++ QW+  +   A + R + VYK  C +C
Sbjct: 1752 QAVKKQWVDSTDISAQLERFFRVYKDECLSC 1782


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/87 (25%), Positives = 35/87 (40%)
 Frame = +2

Query: 119 KSVAVHFGSGRWRCWSSTFCT*AVCAGIGL*SSPTSQPLESQWLVRSLDHASVRRGYEVY 298
           +SV+ H   G       TF +     G  +     S+ L S+ L    DH  V     ++
Sbjct: 471 QSVSSHAKLGMNLTLYLTFSSVGGAFGSAIAGGVWSKRLSSRLLHDLKDHLPVPEIESIF 530

Query: 299 KQVCKACHSLQYIAFRNLVNVTHTEDE 379
           + +  A    Q    RN++NV +T  E
Sbjct: 531 RDLRTALSYPQGTQIRNIINVAYTATE 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,882
Number of Sequences: 5004
Number of extensions: 66626
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)